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环境DNA分析作为一种新兴的植物生物多样性监测非破坏性方法:综述

Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review.

作者信息

Banerjee Pritam, Stewart Kathryn A, Dey Gobinda, Antognazza Caterina M, Sharma Raju Kumar, Maity Jyoti Prakash, Saha Santanu, Doi Hideyuki, de Vere Natasha, Chan Michael W Y, Lin Pin-Yun, Chao Hung-Chun, Chen Chien-Yen

机构信息

Department of Biomedical Sciences, Graduate Institute of Molecular Biology, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi County 62102, Taiwan.

Institute of Environmental Science, Leiden University, 2333 CC Leiden, The Netherlands.

出版信息

AoB Plants. 2022 Jul 2;14(4):plac031. doi: 10.1093/aobpla/plac031. eCollection 2022 Aug.

Abstract

Environmental DNA (eDNA) analysis has recently transformed and modernized biodiversity monitoring. The accurate detection, and to some extent quantification, of organisms (individuals/populations/communities) in environmental samples is galvanizing eDNA as a successful cost and time-efficient biomonitoring technique. Currently, eDNA's application to plants remains more limited in implementation and scope compared to animals and microorganisms. This review evaluates the development of eDNA-based methods for (vascular) plants, comparing its performance and power of detection with that of traditional methods, to critically evaluate and advise best-practices needed to innovate plant biomonitoring. Recent advancements, standardization and field applications of eDNA-based methods have provided enough scope to utilize it in conservation biology for numerous organisms. Despite our review demonstrating only 13% of all eDNA studies focus on plant taxa to date, eDNA has considerable environmental DNA has considerable potential for plants, where successful detection of invasive, endangered and rare species, and community-level interpretations have provided proof-of-concept. Monitoring methods using eDNA were found to be equal or more effective than traditional methods; however, species detection increased when both methods were coupled. Additionally, eDNA methods were found to be effective in studying species interactions, community dynamics and even effects of anthropogenic pressure. Currently, elimination of potential obstacles (e.g. lack of relevant DNA reference libraries for plants) and the development of user-friendly protocols would greatly contribute to comprehensive eDNA-based plant monitoring programs. This is particularly needed in the data-depauperate tropics and for some plant groups (e.g., Bryophytes and Pteridophytes). We further advocate to coupling traditional methods with eDNA approaches, as the former is often cheaper and methodologically more straightforward, while the latter offers non-destructive approaches with increased discrimination ability. Furthermore, to make a global platform for eDNA, governmental and academic-industrial collaborations are essential to make eDNA surveys a broadly adopted and implemented, rapid, cost-effective and non-invasive plant monitoring approach.

摘要

环境DNA(eDNA)分析最近使生物多样性监测发生了变革并实现了现代化。在环境样本中准确检测以及在一定程度上定量生物体(个体/种群/群落),正使eDNA成为一种成功的、具有成本效益和省时的生物监测技术。目前,与动物和微生物相比,eDNA在植物中的应用在实施和范围上仍然较为有限。本综述评估了基于eDNA的(维管)植物方法的发展,将其检测性能和能力与传统方法进行比较,以批判性地评估并提出创新植物生物监测所需的最佳实践建议。基于eDNA的方法的最新进展、标准化和现场应用为在保护生物学中对众多生物体利用该方法提供了足够的空间。尽管我们的综述表明,迄今为止所有eDNA研究中只有13%关注植物类群,但eDNA对植物具有相当大的潜力,在植物方面成功检测入侵物种、濒危物种和稀有物种以及进行群落水平的解读已经提供了概念验证。发现使用eDNA的监测方法与传统方法一样有效或更有效;然而,当两种方法结合使用时,物种检测率会提高。此外,发现eDNA方法在研究物种相互作用、群落动态甚至人为压力的影响方面是有效的。目前,消除潜在障碍(例如缺乏植物相关的DNA参考文库)以及开发用户友好的方案将极大地有助于基于eDNA的全面植物监测计划。在数据匮乏的热带地区以及对于一些植物类群(例如苔藓植物和蕨类植物)来说,这一点尤为必要。我们进一步主张将传统方法与eDNA方法相结合,因为前者通常成本更低且方法上更直接,而后者提供了具有更高辨别能力的非侵入性方法。此外,为了建立一个eDNA全球平台,政府与学术 - 产业合作对于使eDNA调查成为一种广泛采用和实施的、快速、具有成本效益且非侵入性的植物监测方法至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/547d/9389569/f2906a7bbf4e/plac031_fig1.jpg

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