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用于多巴胺转运体放射性核素成像机器学习应用的数字脑模型生成

Generation of Digital Brain Phantom for Machine Learning Application of Dopamine Transporter Radionuclide Imaging.

作者信息

Shao Wenyi, Leung Kevin H, Xu Jingyan, Coughlin Jennifer M, Pomper Martin G, Du Yong

机构信息

The Russell H. Morgan Department of Radiology and Radiational Science, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.

Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.

出版信息

Diagnostics (Basel). 2022 Aug 12;12(8):1945. doi: 10.3390/diagnostics12081945.

Abstract

While machine learning (ML) methods may significantly improve image quality for SPECT imaging for the diagnosis and monitoring of Parkinson's disease (PD), they require a large amount of data for training. It is often difficult to collect a large population of patient data to support the ML research, and the ground truth of lesion is also unknown. This paper leverages a generative adversarial network (GAN) to generate digital brain phantoms for training ML-based PD SPECT algorithms. A total of 594 PET 3D brain models from 155 patients (113 male and 42 female) were reviewed and 1597 2D slices containing the full or a portion of the striatum were selected. Corresponding attenuation maps were also generated based on these images. The data were then used to develop a GAN for generating 2D brain phantoms, where each phantom consisted of a radioactivity image and the corresponding attenuation map. Statistical methods including histogram, Fréchet distance, and structural similarity were used to evaluate the generator based on 10,000 generated phantoms. When the generated phantoms and training dataset were both passed to the discriminator, similar normal distributions were obtained, which indicated the discriminator was unable to distinguish the generated phantoms from the training datasets. The generated digital phantoms can be used for 2D SPECT simulation and serve as the ground truth to develop ML-based reconstruction algorithms. The cumulated experience from this work also laid the foundation for building a 3D GAN for the same application.

摘要

虽然机器学习(ML)方法可能会显著提高用于帕金森病(PD)诊断和监测的SPECT成像的图像质量,但它们需要大量数据进行训练。通常很难收集大量患者数据来支持ML研究,而且病变的真实情况也未知。本文利用生成对抗网络(GAN)生成数字脑模型,用于训练基于ML的PD SPECT算法。回顾了来自155名患者(113名男性和42名女性)的总共594个PET 3D脑模型,并选择了1597个包含全部或部分纹状体的2D切片。还基于这些图像生成了相应的衰减图。然后使用这些数据开发一个用于生成2D脑模型的GAN,其中每个模型由一个放射性图像和相应的衰减图组成。基于10000个生成的模型,使用包括直方图、弗雷歇距离和结构相似性在内的统计方法来评估生成器。当将生成的模型和训练数据集都传递给鉴别器时,获得了相似的正态分布,这表明鉴别器无法区分生成的模型和训练数据集。生成的数字模型可用于2D SPECT模拟,并作为开发基于ML的重建算法的真实情况。这项工作积累的经验也为构建用于相同应用的3D GAN奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e8d/9406894/0b22e6f91916/diagnostics-12-01945-g001.jpg

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