Department of Mathematics, Thiagarajar College of Engineering, Madurai, Tamilnadu, India.
Math Biosci Eng. 2022 Jul 15;19(10):10060-10077. doi: 10.3934/mbe.2022470.
Recently genetic disorders are the most common reason for human fatality. Sickle Cell anemia is a monogenic disorder caused by A-to-T point mutations in the β-globin gene which produces abnormal hemoglobin S (Hgb S) that polymerizes at the state of deoxygenation thus resulting in the physical deformation or erythrocytes sickling. This shortens the expectancy of human life. Thus, the early diagnosis and identification of sickle cell will aid the people in recognizing signs and to take treatments. The manual identification is a time consuming one and might outcome in the misclassification of count as there is millions of red blood cells in one spell. So as to overcome this, data mining approaches like Quantum graph theory model and classifier is effective in detecting sickle cell anemia with high precision rate. The proposed work aims at presenting a mathematical modeling using Quantum graph theory to extract elasticity properties and to distinguish them as normal cells and sickle cell anemia (SCA) in red blood cells. Initially, input DNA sequence is taken and the elasticity property features are extracted by using Quantum graph theory model at which the formation of spanning tree is made followed by graph construction and Hemoglobin quantization. After which, the extracted properties are optimized using Aquila optimization and classified using cascaded Long Short-Term memory (LSTM) to attain the classified outcome of sickle cell and normal cells. Finally, the performance assessment is made and the outcomes attained in terms of accuracy, precision, sensitivity, specificity, and AUC are compared with existing classifier to validate the proposed system effectiveness.
近年来,遗传疾病是导致人类死亡的最常见原因。镰状细胞贫血是一种单基因疾病,由β-珠蛋白基因中的 A 到 T 点突变引起,导致异常血红蛋白 S(HbS)在脱氧状态下聚合,从而导致红细胞变形或镰状化。这缩短了人类的预期寿命。因此,早期诊断和识别镰状细胞将有助于人们识别症状并进行治疗。手动识别是一个耗时的过程,并且可能会导致计数错误,因为在一次检测中可能会有上百万个红细胞。为了克服这个问题,数据挖掘方法,如量子图论模型和分类器,在检测镰状细胞贫血方面具有高精度。本研究旨在提出一种使用量子图论的数学建模方法,以提取弹性特性,并将其区分正常细胞和镰状细胞贫血(SCA)。首先,输入 DNA 序列,使用量子图论模型提取弹性特性,在此过程中形成生成树,然后进行图构建和血红蛋白量化。之后,使用 Aquila 优化算法对提取的特性进行优化,并使用级联长短期记忆(LSTM)进行分类,以获得镰状细胞和正常细胞的分类结果。最后,进行性能评估,并比较准确性、精度、敏感性、特异性和 AUC 等方面的结果,以验证所提出系统的有效性。