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从计算机模拟和 Voronoi 分析看 DMF-水混合物的局部结构。

Local Structure of DMF-Water Mixtures, as Seen from Computer Simulations and Voronoi Analysis.

机构信息

University of Lille, CNRS UMR 8516 - LASIRe─Laboratoire Avancé de Spectroscopie pour les Interactions la Réactivité et l'environnement, 59000 Lille, France.

Department of Biophysics Radiation Biology, Laboratory of Nanochemistry, Semmelweis University, Nagyvárad tér 4, 1089 Budapest, Hungary.

出版信息

J Phys Chem B. 2022 Sep 15;126(36):6964-6978. doi: 10.1021/acs.jpcb.2c02235. Epub 2022 Aug 31.

Abstract

Molecular dynamics simulations of mixtures of ,-dimethylformamide (DMF) with water of various compositions, covering the entire composition range, are performed on the canonical (,,) ensemble. The local structure of the mixtures is analyzed in terms of radial distribution functions and the contributions of the first five neighbors to them, various order parameters of the water molecules around each other, and properties of the Voronoi polyhedra of the molecules. The analyses lead to the following main conclusions. The two molecules are mixing with each other even on the molecular scale; however, small self-aggregates of both components persist even at their small mole fraction values. In particular, water-water H-bonds exist in the entire composition range, while water clusters larger than 3 and 2 molecules disappear above the DMF mole fraction values of about 0.7 and 0.9, respectively. The O atoms of the DMF molecules can well replace water O atoms in the hydrogen-bonding network. Further, the H-bonding structure is enhanced by the presence of the hydrophobic CH groups of the DMF molecules. On the other hand, the H-bonding network of the molecules gradually breaks down upon the addition of DMF to the system due to the lack of H-donating groups of the DMF molecules. Finally, in neat DMF, the molecules form weak, CH-donated H-bonds with each other; however, these H-bonds disappear upon the addition of water due to the increasing competition with the considerably stronger OH-donated H-bonds DMF can form with the water molecules.

摘要

在正则(NVT)系综中对二甲基甲酰胺(DMF)与水的混合物进行了各种组成的分子动力学模拟,涵盖了整个组成范围。混合物的局部结构通过径向分布函数和前五个邻居对它们的贡献、水分子之间的各种顺序参数以及分子的 Voronoi 多面体的性质来分析。分析得出以下主要结论。这两种分子即使在分子尺度上也相互混合;然而,两种成分的小自聚集体即使在它们的小摩尔分数值下也仍然存在。特别是,在整个组成范围内都存在水分子之间的氢键,而大于 3 和 2 个分子的水分子簇在 DMF 摩尔分数值分别约为 0.7 和 0.9 以上时消失。DMF 分子的 O 原子可以很好地取代氢键网络中的水分子 O 原子。此外,由于 DMF 分子的疏水性 CH 基团的存在,氢键结构得到增强。另一方面,由于 DMF 分子缺乏供氢基团,随着 DMF 加入到体系中,分子的氢键网络逐渐破裂。最后,在纯 DMF 中,分子彼此形成较弱的 CH 供体氢键;然而,由于 DMF 可以与水分子形成相当强的 OH 供体氢键,这些氢键在加入水后消失。

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