• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

人髓过氧化物酶低分辨率晶体结构中抗抑郁药帕罗西汀的天然糖基化和结合。

Native glycosylation and binding of the antidepressant paroxetine in a low-resolution crystal structure of human myeloperoxidase.

机构信息

UGSF, CNRS, 50 Avenue de Halley, 59658 Villeneuve d'Ascq, France.

Department of Pharmacognosy, Bioanalysis and Drug Discovery, Faculty of Pharmacy, Université Libre De Bruxelles, Brussels, Belgium.

出版信息

Acta Crystallogr D Struct Biol. 2022 Sep 1;78(Pt 9):1099-1109. doi: 10.1107/S2059798322007082. Epub 2022 Aug 9.

DOI:10.1107/S2059798322007082
PMID:36048150
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9435594/
Abstract

Human myeloperoxidase (MPO) utilizes hydrogen peroxide to oxidize organic compounds and as such plays an essential role in cell-component synthesis, in metabolic and elimination pathways, and in the front-line defence against pathogens. Moreover, MPO is increasingly being reported to play a role in inflammation. The enzymatic activity of MPO has also been shown to depend on its glycosylation. Mammalian MPO crystal structures deposited in the Protein Data Bank (PDB) present only a partial identification of their glycosylation. Here, a newly obtained crystal structure of MPO containing four disulfide-linked dimers and showing an elaborate collection of glycans is reported. These are compared with the glycans identified in proteomics studies and from 18 human MPO structures available in the PDB. The crystal structure also contains bound paroxetine, a blocker of serotonin reuptake that has previously been identified as an irreversible inhibitor of MPO, in the presence of thiocyanate, a physiological substrate of MPO.

摘要

人髓过氧化物酶(MPO)利用过氧化氢氧化有机化合物,因此在细胞成分合成、代谢和消除途径以及抵御病原体的一线防御中发挥着重要作用。此外,MPO 被越来越多地报道在炎症中发挥作用。MPO 的酶活性也被证明依赖于其糖基化。储存在蛋白质数据库(PDB)中的哺乳动物 MPO 晶体结构仅部分鉴定了其糖基化。在这里,报道了一种新获得的 MPO 晶体结构,其中包含四个二硫键连接的二聚体,并显示出精心收集的聚糖。这些与蛋白质组学研究中鉴定的聚糖以及 PDB 中可用的 18 个人类 MPO 结构中的聚糖进行了比较。晶体结构还包含帕罗西汀,一种 5-羟色胺再摄取抑制剂,它以前被鉴定为 MPO 的不可逆抑制剂,在硫氰酸盐存在下,这是 MPO 的一种生理底物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/e5f65031b247/d-78-01099-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/2c5015b6f5da/d-78-01099-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/4333229074fb/d-78-01099-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/12bced77032a/d-78-01099-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/345413b40d39/d-78-01099-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/0241a8a2fff3/d-78-01099-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/8e7f0101d1cf/d-78-01099-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/e5f65031b247/d-78-01099-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/2c5015b6f5da/d-78-01099-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/4333229074fb/d-78-01099-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/12bced77032a/d-78-01099-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/345413b40d39/d-78-01099-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/0241a8a2fff3/d-78-01099-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/8e7f0101d1cf/d-78-01099-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/163b/9435594/e5f65031b247/d-78-01099-fig7.jpg

相似文献

1
Native glycosylation and binding of the antidepressant paroxetine in a low-resolution crystal structure of human myeloperoxidase.人髓过氧化物酶低分辨率晶体结构中抗抑郁药帕罗西汀的天然糖基化和结合。
Acta Crystallogr D Struct Biol. 2022 Sep 1;78(Pt 9):1099-1109. doi: 10.1107/S2059798322007082. Epub 2022 Aug 9.
2
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.超截断的 Asn355- 和 Asn391-聚糖调节中性粒细胞颗粒髓过氧化物酶的活性。
J Biol Chem. 2021 Jan-Jun;296:100144. doi: 10.1074/jbc.RA120.016342. Epub 2020 Dec 10.
3
Glycosylation pattern of mature dimeric leukocyte and recombinant monomeric myeloperoxidase: glycosylation is required for optimal enzymatic activity.成熟二聚体白细胞和重组单体髓过氧化物酶的糖基化模式:糖基化是获得最佳酶活性所必需的。
J Biol Chem. 2010 May 21;285(21):16351-9. doi: 10.1074/jbc.M109.089748. Epub 2010 Mar 23.
4
Neutrophil myeloperoxidase harbors distinct site-specific peculiarities in its glycosylation.中性粒细胞髓过氧化物酶在其糖基化中具有独特的位点特异性特征。
J Biol Chem. 2019 Dec 27;294(52):20233-20245. doi: 10.1074/jbc.RA119.011098. Epub 2019 Nov 12.
5
Hybrid molecules inhibiting myeloperoxidase activity and serotonin reuptake: a possible new approach of major depressive disorders with inflammatory syndrome.抑制髓过氧化物酶活性和5-羟色胺再摄取的杂合分子:伴有炎症综合征的重度抑郁症的一种可能新疗法。
J Pharm Pharmacol. 2014 Aug;66(8):1122-32. doi: 10.1111/jphp.12236. Epub 2014 Mar 27.
6
The glycosylation of myeloperoxidase.髓过氧化物酶的糖基化
Biochim Biophys Acta. 2010 Oct;1804(10):2046-53. doi: 10.1016/j.bbapap.2010.07.001. Epub 2010 Jul 16.
7
Essential role of proximal histidine-asparagine interaction in mammalian peroxidases.近端组氨酸 - 天冬酰胺相互作用在哺乳动物过氧化物酶中的重要作用。
J Biol Chem. 2009 Sep 18;284(38):25929-37. doi: 10.1074/jbc.M109.002154. Epub 2009 Jul 16.
8
T47D Cells Expressing Myeloperoxidase Are Able to Process, Traffic and Store the Mature Protein in Lysosomes: Studies in T47D Cells Reveal a Role for Cys319 in MPO Biosynthesis that Precedes Its Known Role in Inter-Molecular Disulfide Bond Formation.表达髓过氧化物酶的T47D细胞能够在溶酶体中加工、运输和储存成熟蛋白:对T47D细胞的研究揭示了Cys319在MPO生物合成中的作用,该作用先于其在分子间二硫键形成中的已知作用。
PLoS One. 2016 Feb 18;11(2):e0149391. doi: 10.1371/journal.pone.0149391. eCollection 2016.
9
New insights into thiocyanate oxidation by human myeloperoxidase.人类髓过氧化物酶对硫氰酸盐氧化作用的新见解。
J Inorg Biochem. 2016 Sep;162:117-126. doi: 10.1016/j.jinorgbio.2016.06.019. Epub 2016 Jun 15.
10
Immunoglobulins G from patients with ANCA-associated vasculitis are atypically glycosylated in both the Fc and Fab regions and the relation to disease activity.抗中性粒细胞胞质抗体相关性血管炎患者的免疫球蛋白 G 在 Fc 和 Fab 区域均发生异常糖基化,且与疾病活动度有关。
PLoS One. 2019 Feb 28;14(2):e0213215. doi: 10.1371/journal.pone.0213215. eCollection 2019.

引用本文的文献

1
Posttranslational modification and heme cavity architecture of human eosinophil peroxidase-insights from first crystal structure and biochemical characterization.人嗜酸性粒细胞过氧化物酶的翻译后修饰和血红素腔结构:来自第一晶体结构和生化特性分析的见解。
J Biol Chem. 2023 Dec;299(12):105402. doi: 10.1016/j.jbc.2023.105402. Epub 2023 Oct 28.

本文引用的文献

1
Updated restraint dictionaries for carbohydrates in the pyranose form.吡喃糖形式碳水化合物的更新约束字典。
Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):455-465. doi: 10.1107/S2059798322001103. Epub 2022 Mar 4.
2
Dealing with the Ambiguity of Glycan Substructure Search.处理糖基结构搜索的模糊性。
Molecules. 2021 Dec 23;27(1):65. doi: 10.3390/molecules27010065.
3
N-acetyl-β-D-hexosaminidases mediate the generation of paucimannosidic proteins via a putative noncanonical truncation pathway in human neutrophils.
N-乙酰-β-D-氨基葡萄糖苷酶通过人类中性粒细胞中假定的非典型截短途径介导低甘露糖蛋白的生成。
Glycobiology. 2022 Mar 30;32(3):218-229. doi: 10.1093/glycob/cwab108.
4
The case for post-predictional modifications in the AlphaFold Protein Structure Database.AlphaFold蛋白质结构数据库中预测后修改的情况。
Nat Struct Mol Biol. 2021 Nov;28(11):869-870. doi: 10.1038/s41594-021-00680-9.
5
Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed.为了使吡喃糖形式的碳水化合物的几何约束保持一致:现代词典生成器综述。
Curr Med Chem. 2022;29(7):1193-1207. doi: 10.2174/0929867328666210902140754.
6
Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
7
Glycan-protein interactions determine kinetics of -glycan remodeling.聚糖-蛋白质相互作用决定了聚糖重塑的动力学。
RSC Chem Biol. 2021 Apr 16;2(3):917-931. doi: 10.1039/d1cb00019e.
8
Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.超截断的 Asn355- 和 Asn391-聚糖调节中性粒细胞颗粒髓过氧化物酶的活性。
J Biol Chem. 2021 Jan-Jun;296:100144. doi: 10.1074/jbc.RA120.016342. Epub 2020 Dec 10.
9
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer.利用糖组学数据通过Privateer进行糖蛋白3D结构验证。
Beilstein J Org Chem. 2020 Oct 9;16:2523-2533. doi: 10.3762/bjoc.16.204. eCollection 2020.
10
Three-Dimensional Structures of Carbohydrates and Where to Find Them.碳水化合物的三维结构及其所在位置。
Int J Mol Sci. 2020 Oct 18;21(20):7702. doi: 10.3390/ijms21207702.