Kanubaddi Kiran Reddy, Yang Ching-Lun, Huang Pei-Yu, Lin Chung-Yin, Tai Dar-Fu, Lee Chia-Hung
Department of Life Science and Institute of Biotechnology, National Dong Hwa University, Hualien, Taiwan.
Department of Chemistry, National Dong Hwa University, Hualien, Taiwan.
Front Bioeng Biotechnol. 2022 Aug 16;10:943751. doi: 10.3389/fbioe.2022.943751. eCollection 2022.
Peptide conformational imprints (PCIs) offer a promising perspective to directly generate binding sites for preserving enzymes with high catalytic activity and stability. In this study, we synthesized a new chiral cross-linker cost-effectively for controlling the matrix morphology of PCIs on magnetic particles (PCIMPs) to stabilize their recognition capability. Meanwhile, based on the flank part of the sequences on papain (PAP), three epitope peptides were selected and synthesized. Molecularly imprinted polymers (MIPs) were then fabricated in the presence of the epitope peptide using our new cross-linker on magnetic particles (MPs) to generate PCIMPs. PCIMPs were formed with helical cavities that complement the PAP structure to adsorb specifically at the targeted position of PAP. PCIMPs were found to have the best binding parameters to the PAP with = 0.087 μM and = 4.56 μM. Upon esterification of -Boc-His-OH, proton nuclear magnetic resonance (H-NMR) was used to monitor the yield of the reaction and evaluate the activity of PAP/PCIMPs. The kinetic parameters of PAP/PCIMPs were calculated as = 3.0 μM s, = 5 × 10 M, = 1.1 × 10 s, and / = 2.2 M s. In addition, PAP is bound tightly to PCIMPs to sustain its activity after four consecutive cycles.
肽构象印记(PCIs)为直接生成用于保留具有高催化活性和稳定性的酶的结合位点提供了一个有前景的视角。在本研究中,我们经济高效地合成了一种新型手性交联剂,用于控制磁性颗粒上肽构象印记(PCIMPs)的基质形态,以稳定其识别能力。同时,基于木瓜蛋白酶(PAP)序列的侧翼部分,选择并合成了三种表位肽。然后使用我们的新型磁性颗粒交联剂在表位肽存在的情况下制备分子印迹聚合物(MIPs),以生成PCIMPs。PCIMPs形成了与PAP结构互补的螺旋腔,从而在PAP的靶向位置特异性吸附。发现PCIMPs对PAP具有最佳结合参数,解离常数Kd = 0.087 μM,结合常数Ka = 4.56 μM。在对 -Boc-His-OH进行酯化反应时,利用质子核磁共振(H-NMR)监测反应产率并评估PAP/PCIMPs的活性。计算得到PAP/PCIMPs的动力学参数为Vmax = 3.0 μM s,Km = 5 × 10⁻⁵ M,kcat = 1.1 × 10³ s⁻¹,kcat/Km = 2.2 M⁻¹ s⁻¹。此外,PAP与PCIMPs紧密结合,在连续四个循环后仍能维持其活性。