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肺腺癌 m6A RNA 甲基化调控因子基因特征的综合分析及风险评分系统的建立。

Comprehensive Analysis of Gene Signatures of m6ARNA Methylation Regulators in Lung Adenocarcinoma and Development of a Risk Scoring System.

机构信息

College of First Clinical Medicine, Shandong University of Traditional Chinese Medicine, Jinan 250014, Shandong, China.

College of Basic Medical, Shandong University of Traditional Chinese Medicine, Jinan 250014, Shandong, China.

出版信息

J Immunol Res. 2022 Aug 23;2022:7519838. doi: 10.1155/2022/7519838. eCollection 2022.

Abstract

The recent application of targeted immunotherapy has greatly improved the clinical outcomes of patients with lung adenocarcinoma (LUAD), but drug resistance continues to emerge, and to evaluate and to improve patient prognosis are arduous. The diagnostic and prognostic value of N6-methyladenosine (M6A) in LUAD has attracted increasing attention. We systematically studied correlations among important M6A methylation regulators, tumor mutational burden (TMB), and immune infiltration in clinical and sequencing data from the LUAD cohort of the cancer genome map (TCGA). The molecular subtype clusters 1 and 2 were identified by the consensus clustering of 16 M6A regulatory factors. Clinical prognosis, M6A regulatory factor expression, TMB, pathway enrichment, and immune cell infiltration significantly differed between clusters 1 and 2. Compared with other clinical traits, a prognostic risk score system constructed using the M6A regulatory factors HNRNPA2B1 and HNRNPC can serve as an independent prognostic method for LUAD, with higher predictive sensitivity and specificity. Risk scores were significantly higher for cluster 2 than 1, which was consistent with the trend towards a better prognosis in cluster 1. Overall, our findings revealed an important role of M6A methylation regulators in LUAD, and our risk scoring system involving these regulators might help to screen groups at high risk for LUAD and provide important theoretical bioinformatic support for evaluating the prognosis of such patients.

摘要

近年来,靶向免疫疗法的应用极大地改善了肺腺癌(LUAD)患者的临床结局,但耐药性仍不断出现,评估和改善患者预后是一项艰巨的任务。N6-甲基腺苷(M6A)在 LUAD 中的诊断和预后价值引起了越来越多的关注。我们系统地研究了重要的 M6A 甲基化调节剂、肿瘤突变负担(TMB)和 LUAD 队列中癌症基因组图谱(TCGA)测序数据中免疫浸润之间的相关性。通过对 16 个 M6A 调节因子的共识聚类,鉴定出分子亚型簇 1 和簇 2。簇 1 和簇 2 之间的临床预后、M6A 调节因子表达、TMB、途径富集和免疫细胞浸润有显著差异。与其他临床特征相比,使用 M6A 调节因子 HNRNPA2B1 和 HNRNPC 构建的预后风险评分系统可作为 LUAD 的独立预后方法,具有更高的预测敏感性和特异性。与簇 1 相比,簇 2 的风险评分更高,这与簇 1 中预后较好的趋势一致。总之,我们的研究结果揭示了 M6A 甲基化调节剂在 LUAD 中的重要作用,我们的风险评分系统涉及这些调节剂,可能有助于筛选 LUAD 高危人群,并为评估此类患者的预后提供重要的理论生物信息学支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d69/9428682/ef0058beacc9/JIR2022-7519838.001.jpg

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