台湾产甲烷球菌P2F9704a和中兴产甲烷球菌K1F9705b的基因组草图，属于……科的嗜氢产甲烷菌
Draft Genomes of Methanocalculus taiwanensis P2F9704a and Methanocalculus chunghsingensis K1F9705b, Hydrogenotrophic Methanogens Belonging to the Family .
作者信息
Chen Sheng-Chung, Lai Shu-Jung, You Yi-Ting, Shih Chao-Jen, Wu Yen-Chi, Wu Chih-Hung, Liao Ching-Hua
机构信息
School of Chemistry and Chemical Engineering, Hubei Polytechnic University, Huangshi City, Hubei, People's Republic of China.
School of Resources and Chemical Engineering, Sanming University, Sanming City, Fujian, People's Republic of China.
出版信息
Microbiol Resour Announc. 2022 Oct 20;11(10):e0079222. doi: 10.1128/mra.00792-22. Epub 2022 Sep 6.
Abstract
The family comprises hydrogen- and formate-utilizing methanogens. Here, we report two additional draft genome sequences of , those of Methanocalculus taiwanensis P2F9704a (equivalent to BCRC 16182 and DSM 14663) and Methanocalculus chunghsingensis K1F9705b (equivalent to DSM 14646 and OCM 772), which were selected for further species delineation and comparative genomic analyses.
摘要
该家族包含利用氢气和甲酸盐的产甲烷菌。在此，我们报告了另外两个基因组草图序列，即台湾产甲烷球菌P2F9704a（等同于BCRC 16182和DSM 14663）和中兴产甲烷球菌K1F9705b（等同于DSM 14646和OCM 772）的序列，它们被选用于进一步的物种划分和比较基因组分析。
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本文引用的文献
1
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
2
Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes.
Int J Syst Evol Microbiol. 2015 Oct;65(10):3739-3745. doi: 10.1099/ijsem.0.000488. Epub 2015 Jul 29.
3
Enrichment and specific quantification of Methanocalculus in anaerobic digestion.
J Biosci Bioeng. 2015 Dec;120(6):677-83. doi: 10.1016/j.jbiosc.2015.04.007. Epub 2015 Jun 6.
4
Methanoculleus sediminis sp. nov., a methanogen from sediments near a submarine mud volcano.
Int J Syst Evol Microbiol. 2015 Jul;65(7):2141-2147. doi: 10.1099/ijs.0.000233. Epub 2015 Apr 8.
5
Methanoculleus taiwanensis sp. nov., a methanogen isolated from deep marine sediment at the deformation front area near Taiwan.
Int J Syst Evol Microbiol. 2015 Mar;65(Pt 3):1044-1049. doi: 10.1099/ijs.0.000062. Epub 2015 Jan 9.
6
[Methanocalculus natronophilus sp. nov., a new alkaliphilic hydrogenotrophic methanogenic archaeon from a soda lake, and proposal of the new family Methanocalculaceae].
Mikrobiologiia. 2013 Nov-Dec;82(6):681-90.
7
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing.
Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
Phylogenetic analysis of methanogenic enrichment cultures obtained from Lonar Lake in India: isolation of Methanocalculus sp. and Methanoculleus sp.
Microb Ecol. 2007 Nov;54(4):697-704. doi: 10.1007/s00248-007-9228-z. Epub 2007 May 5.
10
Methanofollis formosanus sp. nov., isolated from a fish pond.
Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):837-842. doi: 10.1099/ijs.0.63475-0.
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