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DSM 14164、DSM 17497、DSM 15088、DSM 21245和DSM 16006的高质量基因组草图序列:分类学考量

High-quality draft genome sequences of DSM 14164, DSM 17497, DSM 15088, DSM 21245 and DSM 16006: taxonomic considerations.

作者信息

Peña Arantxa, Busquets Antonio, Gomila Margarita, Mulet Magdalena, Gomila Rosa M, Garcia-Valdes Elena, Reddy T B K, Huntemann Marcel, Varghese Neha, Ivanova Natalia, Chen I-Min, Göker Markus, Woyke Tanja, Klenk Hans-Peter, Kyrpides Nikos, Lalucat Jorge

机构信息

Department of Biology-Microbiology, Universitat de les Illes Balears, Palma de, Mallorca, Spain.

Serveis Cientifico-Tècnics, Universitat de les Illes Balears, Palma de Mallorca, Spain.

出版信息

Access Microbiol. 2019 Oct 29;1(10):e000067. doi: 10.1099/acmi.0.000067. eCollection 2019.

Abstract

is the bacterial genus of Gram-negative bacteria with the highest number of recognized species. It is divided phylogenetically into three lineages and at least 11 groups of species. The group of species is one of the most versatile and best studied. It comprises 15 species with validly published names. As a part of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project, we present the genome sequences of the type strains of five species included in this group: (DSM 14164), (DSM 17497), (DSM 15088) (DSM 21245) and (DSM 16006). These strains represent species of environmental and also of clinical interest due to their pathogenic properties against humans and animals. Some strains of these species promote plant growth or act as plant pathogens. Their genome sizes are among the largest in the group, ranging from 5.3 to 6.3 Mbp. In addition, the genome sequences of the type strains in the taxonomy were analysed via genome-wide taxonomic comparisons of ANIb, gANI and GGDC values among 130 strains classified within the group. The results demonstrate that at least 36 genomic species can be delineated within the phylogenetic group of species.

摘要

是革兰氏阴性菌中已确认物种数量最多的细菌属。它在系统发育上分为三个谱系和至少11个物种组。该物种组是最多样化且研究最充分的组之一。它包括15个具有有效发表名称的物种。作为细菌和古菌基因组百科全书(GEBA)项目的一部分,我们展示了该组中五个物种的模式菌株的基因组序列:(DSM 14164)、(DSM 17497)、(DSM 15088)、(DSM 21245)和(DSM 16006)。由于这些菌株对人类和动物具有致病特性,它们代表了具有环境意义和临床意义的物种。这些物种的一些菌株促进植物生长或充当植物病原体。它们的基因组大小在该组中属于最大的,范围从5.3到6.3 Mbp。此外,通过对该组内分类的130个菌株之间的ANIb、gANI和GGDC值进行全基因组分类比较,分析了该分类法中模式菌株的基因组序列。结果表明,在该物种的系统发育组内可以划分出至少36个基因组物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bcc/7491935/c2c15dae609f/acmi-1-067-g001.jpg

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