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解析蘑菇前体维生素 D 对 COVID-19 Mpro 和 PLpro 蛋白酶的潜在作用:一种计算机模拟方法。

Deciphering the Potential of Pre and Pro-Vitamin D of Mushrooms against Mpro and PLpro Proteases of COVID-19: An In Silico Approach.

机构信息

Centre for Rural Development & Technology, Indian Institute of Technology (IIT), New Delhi 110016, India.

Computational and Synthetic Chemistry Lab., Department of Pharmaceutical Chemistry, Faculty of Pharmacy, VNS Group of Institutions, Bhopal 462044, India.

出版信息

Molecules. 2022 Aug 31;27(17):5620. doi: 10.3390/molecules27175620.

Abstract

Vitamin D's role in combating the SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), the virus causing COVID-19, has been established in unveiling viable inhibitors of COVID-19. The current study investigated the role of pre and pro-vitamin D bioactives from edible mushrooms against Mpro and PLpro proteases of SARS-CoV-2 by computational experiments. The bioactives of mushrooms, specifically ergosterol (provitamin D), 7-dehydrocholesterol (provitamin-D), 22,23-dihydroergocalciferol (provitamin-D), cholecalciferol (vitamin-D), and ergocalciferol (vitamin D) were screened against Mpro and PLpro. Molecular docking analyses of the generated bioactive protease complexes unravelled the differential docking energies, which ranged from -7.5 kcal/mol to -4.5 kcal/mol. Ergosterol exhibited the lowest binding energy (-7.5 kcal/mol) against Mpro and PLpro (-5.9 kcal/mol). The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) and MD simulation analyses indicated that the generated complexes were stable, thus affirming the putative binding of the bioactives to viral proteases. Considering the pivotal role of vitamin D bioactives, their direct interactions against SARS-CoV-2 proteases highlight the promising role of bioactives present in mushrooms as potent nutraceuticals against COVID-19.

摘要

维生素 D 在抗击导致 COVID-19 的 SARS-CoV-2(严重急性呼吸系统综合征冠状病毒 2)方面的作用已在揭示 COVID-19 的可行抑制剂方面得到证实。本研究通过计算实验研究了食用蘑菇中的前维生素 D 和维生素 D 生物活性物质对 SARS-CoV-2 的 Mpro 和 PLpro 蛋白酶的作用。蘑菇的生物活性物质,特别是麦角固醇(前维生素 D)、7-脱氢胆固醇(前维生素-D)、22,23-二羟麦角钙化醇(前维生素-D)、胆钙化醇(维生素-D)和麦角钙化醇(维生素 D)被筛选用于针对 Mpro 和 PLpro。生成的生物活性蛋白酶复合物的分子对接分析揭示了差异对接能,范围从-7.5 kcal/mol 到-4.5 kcal/mol。麦角固醇对 Mpro 和 PLpro 的结合能最低(-7.5 kcal/mol)(-5.9 kcal/mol)。分子力学泊松-玻尔兹曼表面面积(MMPBSA)和 MD 模拟分析表明,生成的复合物是稳定的,从而证实了生物活性物质与病毒蛋白酶的假定结合。考虑到维生素 D 生物活性物质的关键作用,它们与 SARS-CoV-2 蛋白酶的直接相互作用突显了蘑菇中生物活性物质作为对抗 COVID-19 的有效营养保健品的有前途的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/613a/9458008/8b003d286747/molecules-27-05620-g001.jpg

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