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一项计算机模拟分析揭示了假定的线粒体病毒的一个新进化谱系。

An in silico analysis revealed a novel evolutionary lineage of putative mitoviruses.

作者信息

Jacquat Andrés Gustavo, Ulla Sofía Belén, Debat Humberto Julio, Muñoz-Adalia Emigdio Jordán, Theumer Martín Gustavo, Pedrajas María Dolores García, Dambolena José Sebastián

机构信息

Universidad Nacional de Córdoba (UNC), Facultad de Ciencias Exactas Físicas y Naturales (FCEFyN), Córdoba, Argentina.

Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Instituto Multidisciplinario de Biología Vegetal, IMBIV, Córdoba, Argentina.

出版信息

Environ Microbiol. 2022 Dec;24(12):6463-6475. doi: 10.1111/1462-2920.16202. Epub 2022 Sep 21.

Abstract

Mitoviruses (family Mitoviridae) are small capsid-less RNA viruses that replicate in the mitochondria of fungi and plants. However, to date, the only authentic animal mitovirus infecting an insect was identified as Lutzomyia longipalpis mitovirus 1 (LulMV1). Public databases of transcriptomic studies from several animals may be a good source for identifying the often missed mitoviruses. Consequently, a search of mitovirus-like transcripts at the NCBI transcriptome shotgun assembly (TSA) library, and a search for the mitoviruses previously recorded at the NCBI non-redundant (nr) protein sequences library, were performed in order to identify new mitovirus-like sequences associated with animals. In total, 10 new putative mitoviruses were identified in the TSA database and 8 putative mitoviruses in the nr protein database. To our knowledge, these results represent the first evidence of putative mitoviruses associated with poriferan, cnidarians, echinoderms, crustaceans, myriapods and arachnids. According to different phylogenetic inferences using the maximum likelihood method, these 18 putative mitoviruses form a robust monophyletic lineage with LulMV1, the only known animal-infecting mitovirus. These findings based on in silico procedures provide strong evidence for the existence of a clade of putative mitoviruses associated with animals, which has been provisionally named 'kvinmitovirus'.

摘要

线粒体病毒(线粒体病毒科)是一类无衣壳的小型RNA病毒,在真菌和植物的线粒体中复制。然而,迄今为止,唯一经证实感染昆虫的动物线粒体病毒被鉴定为长须罗蛉线粒体病毒1(LulMV1)。来自几种动物的转录组学研究的公共数据库可能是识别常常被遗漏的线粒体病毒的良好来源。因此,为了识别与动物相关的新的线粒体病毒样序列,我们在NCBI转录组鸟枪法测序(TSA)文库中搜索了线粒体病毒样转录本,并在NCBI非冗余(nr)蛋白质序列文库中搜索了先前记录的线粒体病毒。总共在TSA数据库中鉴定出10种新的假定线粒体病毒,在nr蛋白质数据库中鉴定出8种假定线粒体病毒。据我们所知,这些结果代表了与多孔动物、刺胞动物、棘皮动物、甲壳类动物、多足类动物和蛛形纲动物相关的假定线粒体病毒的首个证据。根据使用最大似然法的不同系统发育推断,这18种假定线粒体病毒与唯一已知感染动物的线粒体病毒LulMV1形成了一个强大的单系谱系。这些基于计算机程序的发现为存在一个与动物相关的假定线粒体病毒分支提供了有力证据,该分支已被暂时命名为“kvinmitovirus”。

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