ICSM, CNRS, CEA, Univ Montpellier, ENSCM, Marcoule, France; Division of Theoretical Chemistry, Lund University, POB 124, SE-221 00 Lund, Sweden.
X-ray and Neutron Science, Niels Bohr Institute, University of Copenhagen, Denmark.
J Colloid Interface Sci. 2023 Jan;629(Pt A):794-804. doi: 10.1016/j.jcis.2022.08.054. Epub 2022 Aug 29.
Interactions between biomolecules are ubiquitous in nature and crucial to many applications including vaccine development; environmentally friendly textile detergents; and food formulation. Using small angle X-ray scattering and structure-based molecular simulations, we explore protein-protein interactions in dilute to semi-concentrated protein solutions. We address the pertinent question, whether interaction models developed at infinite dilution can be extrapolated to concentrated regimes? Our analysis is based on measured and simulated osmotic second virial coefficients and solution structure factors at varying protein concentration and for different variants of the protein Thermomyces Lanuginosus Lipase (TLL). We show that in order to span the dilute and semi-concentrated regime, any model must carefully capture the balance between spatial and orientational correlations as the protein concentration is elevated. This requires consideration of the protein surface morphology, including possible patch interactions. Experimental data for TLL is most accurately described when assuming a patchy interaction, leading to dimer formation. Our analysis supports that the dimeric proteins predominantly exist in their open conformation where the active site is exposed, thereby maximising hydrophobic attractions that promote inter-protein alignment.
生物分子之间的相互作用在自然界中无处不在,对许多应用至关重要,包括疫苗开发;环保型纺织品洗涤剂;和食品配方。我们使用小角度 X 射线散射和基于结构的分子模拟技术,研究稀至半浓缩蛋白质溶液中的蛋白质-蛋白质相互作用。我们解决了一个相关问题,即在无限稀释条件下开发的相互作用模型是否可以外推到浓缩状态?我们的分析基于在不同蛋白质浓度下测量和模拟的渗透压第二维里系数和溶液结构因子,以及不同变体的 Thermomyces Lanuginosus Lipase(TLL)。我们表明,为了跨越稀溶液和半浓缩溶液区域,任何模型都必须仔细捕捉蛋白质浓度升高时空间和方向相关性之间的平衡。这需要考虑蛋白质表面形态,包括可能的斑块相互作用。当假设存在斑块相互作用导致二聚体形成时,TLL 的实验数据可以得到最准确的描述。我们的分析支持二聚体蛋白质主要以其开放构象存在,其中活性位点暴露,从而最大限度地提高促进蛋白质间对齐的疏水力。