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虚拟筛选和分子动力学研究 mTOR 的潜在新配体。

Virtual screening and molecular dynamic study of potential new binders to mTOR.

机构信息

Laboratory of Molecular Modeling Applied to Chemical and Biological Defense (LMCBD), Military Institute of Engineering, Rio de Janeiro, RJ, 22290-270, Brazil.

Department of Chemistry, Faculty of Science, University of Hradec Kralove, Rokitanskeho 62, 500 03, Hradec Kralove, Czech Republic.

出版信息

J Mol Model. 2022 Sep 14;28(10):315. doi: 10.1007/s00894-022-05309-2.

Abstract

In the present work, a library of 239 frentizole derivatives formerly synthesized by our research group were virtually screened on the FRB domain of mTOR in a search of potential binders for further experimental evaluation. 39 compounds from this library were virtually selected and classified in 7 groups according to their structural features. 9 representative compounds of these 7 groups were further submitted to rounds of MD simulation and MM-PBSA calculations. Analysis of our results pointed to the most promising among these groups as binders to the FRB domain of mTOR. We believe that they structurally represent a priority portion of the original library for further experimental evaluation.

摘要

在本工作中,我们对之前由本研究小组合成的 239 个 frentizole 衍生物库进行了虚拟筛选,以寻找潜在的结合物用于进一步的实验评估。从这个库中虚拟选择了 39 种化合物,并根据其结构特征将其分类为 7 组。这 7 组中的 9 种代表性化合物进一步进行了 MD 模拟和 MM-PBSA 计算的循环。对我们的结果进行分析,指出这些化合物中最有前途的部分作为 mTOR 的 FRB 结构域的结合物。我们认为它们在结构上代表了原始库的一个优先部分,需要进一步进行实验评估。

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