Department of Microbiology and Immunology, Carver College of Medicine, University of Iowagrid.214572.7, Iowa City, Iowa, USA.
Center for Phage Technology, Texas A&M AgriLife Research, College Station, Texas, USA.
Microbiol Mol Biol Rev. 2022 Dec 21;86(4):e0012421. doi: 10.1128/mmbr.00124-21. Epub 2022 Oct 19.
Laboratory-generated hybrids between phage λ and related phages played a seminal role in establishment of the λ model system, which, in turn, served to develop many of the foundational concepts of molecular biology, including gene structure and control. Important λ hybrids with phages 21 and 434 were the earliest of such phages. To understand the biology of these hybrids in full detail, we determined the complete genome sequences of phages 21 and 434. Although both genomes are canonical members of the λ-like phage family, they both carry unsuspected bacterial virulence gene types not previously described in this group of phages. In addition, we determined the sequences of the hybrid phages λ λ , and λ These sequences show that the replacements of λ DNA by nonhomologous segments of 21 or 434 DNA occurred through homologous recombination in adjacent sequences that are nearly identical in the parental phages. These five genome sequences correct a number of errors in published sequence fragments of the 21 and 434 genomes, and they point out nine nucleotide differences from Sanger's original λ sequence that are likely present in most extant λ strains in laboratory use today. We discuss the historical importance of these hybrid phages in the development of fundamental tenets of molecular biology and in some of the earliest gene cloning vectors. The 434 and 21 genomes reinforce the conclusion that the genomes of essentially all natural λ-like phages are mosaics of sequence modules from a pool of exchangeable segments.
实验室生成的噬菌体 λ 及其相关噬菌体之间的杂交体在建立 λ 模型系统中发挥了重要作用,而该模型系统反过来又为分子生物学的许多基础概念的发展做出了贡献,包括基因结构和控制。与噬菌体 21 和 434 杂交的噬菌体 λ 是最早的此类噬菌体。为了全面了解这些杂交体的生物学特性,我们确定了噬菌体 21 和 434 的完整基因组序列。尽管这两个基因组都是 λ 样噬菌体家族的规范成员,但它们都携带了以前在该噬菌体群中未描述过的意想不到的细菌毒力基因类型。此外,我们还确定了杂交噬菌体 λ 、 λ 的序列。这些序列表明,λ DNA 被 21 或 434 DNA 的非同源片段取代是通过在亲本噬菌体中几乎相同的相邻序列中发生同源重组而发生的。这五个基因组序列纠正了 21 和 434 基因组已发表序列片段中的一些错误,并指出了与 Sanger 最初的 λ 序列有 9 个核苷酸的差异,这些差异很可能存在于当今实验室使用的大多数现存 λ 菌株中。我们讨论了这些杂交噬菌体在分子生物学基本原理的发展和一些最早的基因克隆载体中的历史重要性。434 和 21 基因组强化了这样一个结论,即基本上所有天然 λ 样噬菌体的基因组都是来自可交换片段库的序列模块的马赛克。