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空肠弯曲杆菌 GDSL 家族酯酶 CJ0610C 的结构和生化分析。

Structural and biochemical analysis of the GDSL-family esterase CJ0610C from Campylobacter jejuni.

机构信息

Division of Biomedical Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, 24341, Republic of Korea.

Institute of Bioscience and Biotechnology, Kangwon National University, Chuncheon, 24341, Republic of Korea.

出版信息

Biochem Biophys Res Commun. 2022 Nov 26;631:124-129. doi: 10.1016/j.bbrc.2022.09.071. Epub 2022 Sep 21.

Abstract

GDSL domain-containing proteins generally hydrolyze esters or lipids and play critical roles in diverse biological and industrial processes. GDSL hydrolases use catalytic triad and oxyanion hole residues from conserved blocks I, II, III, and V to drive the esterase reaction. However, GDSL hydrolases exhibit large deviations in sequence, structure, and substrate specificity, requiring the characterization of each GDSL hydrolase to reveal its catalytic mechanism. We identified a GDSL protein (CJ0610C) from pathogenic Campylobacter jejuni and assessed its biochemical and structural features. CJ0610C displayed esterase activity for p-nitrophenyl acetate and preferred short chain esters and alkaline pH. The C-terminal two-thirds of CJ0610C corresponding to the GDSL domain forms a three-layered α/β/α fold as a core structure in which a five-stranded β-sheet is sandwiched by α-helices. In the CJ0610C structure, conserved catalytic triad and oxyanion hole residues that are indispensable for esterase activity are found in blocks I, III, and V. However, CJ0610C lacks the conserved block-II glycine residue and instead employs a unique asparagine residue as another oxyanion hole residue. Moreover, our structural analysis suggests that substrate binding is mediated by a CJ0610C-specific pocket, which is surrounded by hydrophobic residues and occluded at one end by a positively charged arginine residue.

摘要

GDSL 结构域蛋白通常水解酯类或脂类,并在多种生物和工业过程中发挥关键作用。GDSL 水解酶利用催化三联体和保守结构域 I、II、III 和 V 中的氧阴离子空穴残基来驱动酯酶反应。然而,GDSL 水解酶在序列、结构和底物特异性方面表现出较大的差异,需要对每个 GDSL 水解酶进行特征描述,以揭示其催化机制。我们从致病性空肠弯曲菌中鉴定出一种 GDSL 蛋白(CJ0610C),并评估了其生化和结构特征。CJ0610C 对 p-硝基苯乙酸酯具有酯酶活性,并且偏好短链酯和碱性 pH 值。CJ0610C 的 C 端三分之二对应于 GDSL 结构域,形成一个三层 α/β/α 折叠作为核心结构,其中一个五链 β 折叠被 α 螺旋夹在中间。在 CJ0610C 结构中,发现了对酯酶活性不可或缺的保守催化三联体和氧阴离子空穴残基存在于结构域 I、III 和 V 中。然而,CJ0610C 缺乏保守的 II 结构域甘氨酸残基,而是采用独特的天冬酰胺残基作为另一个氧阴离子空穴残基。此外,我们的结构分析表明,底物结合是由 CJ0610C 特异性口袋介导的,该口袋由疏水性残基包围,一端被带正电荷的精氨酸残基封闭。

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