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肺腺鳞癌基因组特征和突变特征的综合分析

Comprehensive analyses of genomic features and mutational signatures in adenosquamous carcinoma of the lung.

作者信息

Wang Hongbiao, Liu Jun, Zhu Sujuan, Miao Kun, Li Zhifeng, Qi Xiaofang, Huang Lujia, Guo Lijie, Wang Yan, Cai Yuyin, Lin Yingcheng

机构信息

Medical Oncology Session No.1, Cancer Hospital of Shantou University Medical College, Shantou, China.

Department of Thoracic Surgery, The First People's Hospital of Yunnan Province, Kunming, China.

出版信息

Front Oncol. 2022 Sep 14;12:945843. doi: 10.3389/fonc.2022.945843. eCollection 2022.

Abstract

Adenosquamous carcinoma (ASC) of the lung is a relatively rare tumor with strong aggressiveness and poor prognosis. The analysis of mutational signatures is becoming routine in cancer genomics and has implications for pathogenesis, classification, and prognosis. However, the distribution of mutational signatures in ASC patients has not been evaluated. In this study, we sought to reveal the landscape of genomic mutations and mutational signatures in ASC. Next-generation sequencing (NGS) technology was used to retrieve genomic information for 124 ASC patients. and were the most prevalent somatic mutations observed, and were present in 66.9% and 54.8% of patients, respectively. (21%), (21%), and (18.5%) mutations were also observed. An analysis of gene fusion/rearrangement characteristics revealed a total of 64 gene fusions. The highest frequency of variants was determined for fusions, with six classical and two intergenic fusions, followed by three fusions and one fusion. 19del (45.6%), and L858R (38.2%) and its amplification (29.4%) were the top three mutations. We extracted mutational signatures from NGS data and then performed a statistical analysis in order to search for genomic and clinical features that could be linked to mutation signatures. Amongst signatures cataloged at COSMIC, the most prevalent, high-frequency base changes were for C > T; and the five most frequent signatures, from highest to lowest, were 2, 3, 1, 30, and 13. Signatures 1 and 6 were determined to be associated with age and tumor stage, respectively, and Signatures 22 and 30 were significantly related to smoking. We additionally evaluated the correlation between tumor mutational burden (TMB) and genomic variations. We found that mutations , , and were associated with high TMB. The homologous recombination repair (HRR) pathway-related gene mutation displayed a slightly higher TMB than those without mutations. Our study is the first to report comprehensive genomic features and mutational signatures in Chinese ASC patients. Results obtained from our study will help the scientific community better understand signature-related mutational processes in ASC.

摘要

肺腺鳞癌(ASC)是一种相对罕见的肿瘤,侵袭性强且预后较差。突变特征分析在癌症基因组学中已成为常规操作,对发病机制、分类和预后具有重要意义。然而,ASC患者中突变特征的分布尚未得到评估。在本研究中,我们试图揭示ASC中的基因组突变情况和突变特征。采用二代测序(NGS)技术获取了124例ASC患者的基因组信息。 和 是观察到的最常见的体细胞突变,分别存在于66.9%和54.8%的患者中。还观察到 (21%)、 (21%)和 (18.5%)突变。对基因融合/重排特征的分析共发现了64种基因融合。 融合的变异频率最高,有6种经典 融合和2种基因间 融合,其次是3种 融合和1种 融合。 19del(45.6%)、 L858R(38.2%)及其扩增(29.4%)是前三位的 突变。我们从NGS数据中提取突变特征,然后进行统计分析,以寻找可能与突变特征相关的基因组和临床特征。在COSMIC编目的特征中,最常见的高频碱基变化是C>T;从最高到最低的五个最常见特征是2、3、1、30和13。特征1和6分别被确定与年龄和肿瘤分期相关,特征22和30与吸烟显著相关。我们还评估了肿瘤突变负荷(TMB)与基因组变异之间的相关性。我们发现 、 和 突变与高TMB相关。同源重组修复(HRR)途径相关基因突变显示出的TMB略高于无突变者。我们的研究首次报道了中国ASC患者的全面基因组特征和突变特征。我们的研究结果将有助于科学界更好地理解ASC中与特征相关的突变过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddff/9518956/b65c5ea4523b/fonc-12-945843-g001.jpg

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