从泡菜汤中分离出的植物乳杆菌VHProbi V38菌株的全基因组序列
Complete Genome Sequence of Lactiplantibacillus plantarum Strain VHProbi V38, Isolated from Kimchi Soup.
作者信息
Cui Hongchang, Zhang Jingyan, Duan Zhi
机构信息
Qingdao Vland Biotech Inc., Qingdao, China.
出版信息
Microbiol Resour Announc. 2022 Oct 20;11(10):e0049322. doi: 10.1128/mra.00493-22. Epub 2022 Oct 3.
Abstract
Lactiplantibacillus plantarum strain VHProbi V38 is a traditional lactic acid bacterial probiotic that has been commercialized for several years. Here, we report the whole-genome sequence of this strain. Sequencing yielded a 3,197,704-bp genome and 3,050 protein-coding genes.
摘要
植物乳杆菌VHProbi V38菌株是一种传统的乳酸菌益生菌，已商业化数年。在此，我们报告该菌株的全基因组序列。测序得到一个3,197,704碱基对的基因组和3,050个蛋白质编码基因。
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本文引用的文献
1
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.tRNAscan-SE：在基因组序列中搜索tRNA基因。
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
5
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
6
Isolation and identification of lactic acid bacteria from Tarag in Eastern Inner Mongolia of China by 16S rRNA sequences and DGGE analysis.采用 16S rRNA 序列和 DGGE 分析方法从中国内蒙古东部的塔拉中分离和鉴定乳酸菌。
Microbiol Res. 2012 Jan 20;167(2):110-5. doi: 10.1016/j.micres.2011.05.001.
7
Glimmer: multilevel MDS on the GPU.微光：基于图形处理器的多级多维尺度分析
IEEE Trans Vis Comput Graph. 2009 Mar-Apr;15(2):249-61. doi: 10.1109/TVCG.2008.85.
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