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优化化学交换饱和转移(CEST)实验中的频率采样

Optimizing frequency sampling in CEST experiments.

作者信息

Bolik-Coulon Nicolas, Hansen D Flemming, Kay Lewis E

机构信息

Department of Molecular Genetics, University of Toronto, Toronto, M5S 1A8, Canada.

Department of Chemistry, University of Toronto, Toronto, ON, M5S 3H6, Canada.

出版信息

J Biomol NMR. 2022 Dec;76(5-6):167-183. doi: 10.1007/s10858-022-00403-2. Epub 2022 Oct 4.

Abstract

For the past decade chemical exchange saturation transfer (CEST) experiments have been successfully applied to study exchange processes in biomolecules involving sparsely populated, transiently formed conformers. Initial implementations focused on extensive sampling of the CEST frequency domain, requiring significant measurement times. Here we show that the lengthy sampling schemes often used are not optimal and that reduced frequency sampling schedules can be developed without a priori knowledge of the exchange parameters, that only depend on the chosen B field, and, to a lesser extent, on the intrinsic transverse relaxation rates of ground state spins. The reduced sampling approach described here can be used synergistically with other methods for reducing measurement times such as those that excite multiple frequencies in the CEST dimension simultaneously, or make use of non-uniform sampling of indirectly detected time domains, to further decrease measurement times. The proposed approach is validated by analysis of simulated and experimental datasets.

摘要

在过去十年中,化学交换饱和转移(CEST)实验已成功应用于研究生物分子中的交换过程,这些过程涉及数量稀少、瞬时形成的构象异构体。最初的实验方案侧重于对CEST频域进行广泛采样,这需要较长的测量时间。在此我们表明,常用的冗长采样方案并非最优,并且可以在无需预先了解交换参数的情况下制定减少频率采样的时间表,这些参数仅取决于所选的磁场,并且在较小程度上取决于基态自旋的固有横向弛豫率。这里描述的减少采样方法可以与其他减少测量时间的方法协同使用,例如那些在CEST维度中同时激发多个频率的方法,或者利用间接检测时域的非均匀采样,以进一步缩短测量时间。通过对模拟和实验数据集的分析验证了所提出的方法。

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