Danielyan Kristine E, Grabski Hovakim V, Ginosyan Siranuysh V, Chailyan Samvel G, Tiratsuyan Susanna G
Institute of Biochemistry named after H. Buniatian, NAS RA, Yerevan, Armenia.
Institute of Biomedicine and Pharmacy, Russian-Armenian University, Yerevan, Armenia.
Cell Biochem Biophys. 2022 Dec;80(4):699-709. doi: 10.1007/s12013-022-01104-1. Epub 2022 Oct 6.
Phosphoribosyl pyrophosphate synthetase-1 (PRPS-1; EC 2.7.6.1.) catalyzes the binding of phosphate-group to ribose 5-phosphate, forming the 5-phosphoribosyl-1-pyrophosphate, which is necessary for the salvage pathways of purine and pyrimidine, pyridine nucleotide cofactors - NAD and NADP, the amino acids histidine and tryptophan biosynthesis. We aimed to investigate the impact of the different effectors on the activity of PRPS-1, to check the activity of the enzyme in vitro in a wide range of pHs and investigate some structural essentials of the enzyme, isolated from brain and liver. Molecular docking analyses were used to delineate the essentials of PRPS-1 structure, to find out the existence of enzyme effectors. Previously created by us kit was used for determination of the activity of PRPS-1 based on the formation of the inorganic phosphates (λ = 700 nm, Cary 60, Agilent, USA). Effectors impact on the activity of PRPS-1 was evaluated. In silico results of the effectors were later proven by in vitro experiments. For the first time biochemical essentials, including the existence of the multiple pockets, involvement of the amino acids into the processes of interactions with the effectors, evolutional of the sequence conservation, tissue depended V differences were identified.
磷酸核糖焦磷酸合成酶-1(PRPS-1;EC 2.7.6.1.)催化磷酸基团与5-磷酸核糖结合,形成5-磷酸核糖-1-焦磷酸,这是嘌呤和嘧啶补救途径、吡啶核苷酸辅因子NAD和NADP以及氨基酸组氨酸和色氨酸生物合成所必需的。我们旨在研究不同效应物对PRPS-1活性的影响,在广泛的pH范围内体外检测该酶的活性,并研究从脑和肝中分离出的该酶的一些结构要素。分子对接分析用于描绘PRPS-1结构的要素,以找出酶效应物的存在。我们之前创建的试剂盒用于基于无机磷酸盐的形成(λ = 700 nm,Cary 60,美国安捷伦公司)来测定PRPS-1的活性。评估了效应物对PRPS-1活性的影响。效应物的计算机模拟结果随后通过体外实验得到证实。首次确定了生化要素,包括多个口袋的存在、氨基酸参与与效应物相互作用的过程、序列保守性的演变、组织依赖性差异。