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疟原虫线粒体核糖体蛋白 RSM22 和 L23 条件敲低后转录变化。

Transcriptional changes in Plasmodium falciparum upon conditional knock down of mitochondrial ribosomal proteins RSM22 and L23.

机构信息

Center for Molecular Parasitology, Department of Microbiology and Immunology Drexel University College of Medicine, Philadelphia, Pennsylvania, United States of America.

出版信息

PLoS One. 2022 Oct 6;17(10):e0274993. doi: 10.1371/journal.pone.0274993. eCollection 2022.

Abstract

The mitochondrion of malaria parasites is an attractive antimalarial drug target, which require mitoribosomes to translate genes encoded in the mitochondrial (mt) DNA. Plasmodium mitoribosomes are composed of highly fragmented ribosomal RNA (rRNA) encoded in the mtDNA. All mitoribosomal proteins (MRPs) and other assembly factors are encoded in the nuclear genome. Here, we have studied one putative assembly factor, RSM22 (Pf3D7_1027200) and one large subunit (LSU) MRP, L23 (Pf3D7_1239100) in Plasmodium falciparum. We show that both proteins localize to the mitochondrion. Conditional knock down (KD) of PfRSM22 or PfMRPL23 leads to reduced cytochrome bc1 complex activity and increased sensitivity to bc1 inhibitors such as atovaquone and ELQ-300. Using RNA sequencing as a tool, we reveal the transcriptomic changes of nuclear and mitochondrial genomes upon KD of these two proteins. In the early phase of KD, while most mt rRNAs and transcripts of putative MRPs were downregulated in the absence of PfRSM22, many mt rRNAs and several MRPs were upregulated after KD of PfMRPL23. The contrast effects in the early phase of KD likely suggests non-redundant roles of PfRSM22 and PfMRPL23 in the assembly of P. falciparum mitoribosomes. At the late time points of KD, loss of PfRSM22 and PfMRPL23 caused defects in many essential metabolic pathways and transcripts related to essential mitochondrial functions, leading to parasite death. In addition, we enlist mitochondrial proteins of unknown function that are likely novel Plasmodium MRPs based on their structural similarity to known MRPs as well as their expression profiles in KD parasites.

摘要

疟原虫的线粒体是一个有吸引力的抗疟药物靶点,它需要线粒体核糖体来翻译线粒体 (mt) DNA 编码的基因。疟原虫核糖体由高度碎片化的 mtDNA 编码的核糖体 RNA (rRNA) 组成。所有的线粒体核糖体蛋白 (MRP) 和其他组装因子都编码在核基因组中。在这里,我们研究了一种假定的组装因子 RSM22 (Pf3D7_1027200) 和一种大亚基 (LSU) MRP L23 (Pf3D7_1239100) 在恶性疟原虫中。我们表明,这两种蛋白质都定位于线粒体。PfRSM22 或 PfMRPL23 的条件敲低 (KD) 导致细胞色素 bc1 复合物活性降低,对 bc1 抑制剂如阿托伐醌和 ELQ-300 的敏感性增加。我们使用 RNA 测序作为一种工具,揭示了这两种蛋白 KD 后核基因组和线粒体基因组的转录组变化。在 KD 的早期阶段,虽然大多数 mt rRNA 和假定的 MRP 转录物在没有 PfRSM22 的情况下下调,但在 PfMRPL23 的 KD 后,许多 mt rRNA 和几个 MRP 上调。KD 早期阶段的对比效应可能表明 PfRSM22 和 PfMRPL23 在疟原虫线粒体核糖体组装中具有非冗余作用。在 KD 的晚期,PfRSM22 和 PfMRPL23 的缺失导致许多必需代谢途径和与必需线粒体功能相关的转录物的缺陷,导致寄生虫死亡。此外,我们根据其与已知 MRP 的结构相似性以及在 KD 寄生虫中的表达谱,列出了线粒体未知功能的蛋白质,这些蛋白质可能是新的疟原虫 MRP。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37d8/9536634/42ba77587c23/pone.0274993.g001.jpg

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