Laboratory of Organic Chemistry and Interdisciplinarity, University of Souk Ahras, Souk Ahras, Algeria.
Laboratory of Science and Technology of Water and Environment, University of Souk Ahras, Souk Ahras, Algeria.
J Mol Model. 2022 Oct 8;28(11):348. doi: 10.1007/s00894-022-05342-1.
Forming complexes with cyclodextrins can protect nicotinic acid (vitamin B3) from premature metabolism and enhance the solubility and stability of this drug. In this work, the formation of the inclusion complex of the neutral form of nicotinic acid and β-cyclodextrin was achieved. The complex is modeled using PM3, PM6-D4H3, and PM7, by considering two orientations of the guest: A and B, one is from wide to narrow rim, and the second is from narrow to the wide rim, respectively. The global minima positions were re-optimized using three density function methods: MN-15, B3LYP, and PW6B95-D3 with polarized Pople basis set 6-31G(d) in gas and aqueous phase. Orientation A showed the minimum complexation energy where the carboxylic functional group of nicotinic acid is located on the primary hydroxyl rim of β-cyclodextrin and the pyridine ring is totally embedded in the cavity. To further our study on the nature of complexation and the interactions of this host-guest system, different calculations were done. The reactivity indices showed that orientation A is harder than B and more electrophilic; the charge transfer occurred from the host to the guest and was confirmed by the natural population analysis (NPA). The natural bond orbitals (NBO) reveal the delocalization of orbitals between the host and the guest, quantum theory of atoms in molecules (QTAIM) analysis, and non-covalent interaction (NCI) analysis based on a reduced density gradient (RDG) give a detailed description of the nature of interactions between the host and the guest such as the hydrogen bonding and van der Waals interaction, and confirmed the stability of the complex given by the orientation A.
与环糊精形成配合物可以保护烟酸(维生素 B3)免受过早代谢,并提高该药物的溶解度和稳定性。在这项工作中,实现了烟酸中性形式与β-环糊精的包合配合物的形成。使用 PM3、PM6-D4H3 和 PM7 模型化配合物,考虑客体的两种取向:A 和 B,一种是从宽到窄边缘,另一种是从窄到宽边缘。使用三种密度泛函方法 MN-15、B3LYP 和 PW6B95-D3 以及极化的 Pople 基组 6-31G(d)在气相和水相下重新优化了全局最小位置。取向 A 显示出最小的配合能,其中烟酸的羧酸官能团位于β-环糊精的初级羟基边缘,吡啶环完全嵌入空腔中。为了进一步研究配合物的性质和这种主客体体系的相互作用,进行了不同的计算。反应性指数表明取向 A 比 B 更硬且更具亲电性;电荷从主体转移到客体,并通过自然电荷分析 (NPA) 得到证实。自然键轨道 (NBO) 揭示了主体和客体之间轨道的离域化,基于约化密度梯度 (RDG) 的原子分子量子理论 (QTAIM) 分析和非共价相互作用 (NCI) 分析提供了主体和客体之间相互作用的详细描述,例如氢键和范德华相互作用,并证实了取向 A 给出的配合物的稳定性。