BRD4 串联结构域中与乙酰化组蛋白 H4 肽的溴结构域相互作用:对结构域动力学和内部灵活性的影响。
Bromodomain Interactions with Acetylated Histone 4 Peptides in the BRD4 Tandem Domain: Effects on Domain Dynamics and Internal Flexibility.
机构信息
Biophysical Chemistry, Center for Molecular Protein Science, Department of Chemistry, Lund University, SE-221 00Lund, Sweden.
Mechanistic and Structural Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, CambridgeCB4 0WG, U.K.
出版信息
Biochemistry. 2022 Nov 1;61(21):2303-2318. doi: 10.1021/acs.biochem.2c00226. Epub 2022 Oct 10.
The bromodomain and extra-terminal (BET) protein BRD4 regulates gene expression via recruitment of transcriptional regulatory complexes to acetylated chromatin. Like other BET proteins, BRD4 contains two bromodomains, BD1 and BD2, that can interact cooperatively with target proteins and designed ligands, with important implications for drug discovery. Here, we used nuclear magnetic resonance (NMR) spectroscopy to study the dynamics and interactions of the isolated bromodomains, as well as the tandem construct including both domains and the intervening linker, and investigated the effects of binding a tetra-acetylated peptide corresponding to the tail of histone 4. The peptide affinity is lower for both domains in the tandem construct than for the isolated domains. Using N spin relaxation, we determined the global rotational correlation times and residue-specific order parameters for BD1 and BD2. Isolated BD1 is monomeric in the apo state but apparently dimerizes upon binding the tetra-acetylated peptide. Isolated BD2 partially dimerizes in both the apo and peptide-bound states. The backbone order parameters reveal marked differences between BD1 and BD2, primarily in the acetyl-lysine binding site where the ZA loop is more flexible in BD2. Peptide binding reduces the order parameters of the ZA loop in BD1 and the ZA and BC loops in BD2. The AB loop, located distally from the binding site, shows variable dynamics that reflect the different dimerization propensities of the domains. These results provide a basis for understanding target recognition by BRD4.
溴结构域和末端结构域(BET)蛋白 BRD4 通过募集转录调控复合物到乙酰化染色质上来调节基因表达。与其他 BET 蛋白一样,BRD4 包含两个溴结构域,BD1 和 BD2,可以与靶蛋白和设计的配体协同相互作用,这对药物发现具有重要意义。在这里,我们使用核磁共振(NMR)光谱学研究了分离的溴结构域以及包含两个结构域和中间连接子的串联结构的动力学和相互作用,并研究了结合对应于组蛋白 4 尾部的四乙酰化肽的影响。与分离的结构域相比,串联结构中两个结构域的肽亲和力都较低。使用 N 自旋弛豫,我们确定了 BD1 和 BD2 的全局旋转相关时间和残基特异性顺序参数。在apo 状态下,分离的 BD1 是单体,但在结合四乙酰化肽时显然会二聚化。在 apo 和肽结合状态下,分离的 BD2 部分二聚化。骨架顺序参数显示 BD1 和 BD2 之间存在明显差异,主要在乙酰赖氨酸结合位点,ZA 环在 BD2 中更灵活。肽结合降低了 BD1 中 ZA 环和 BD2 中 ZA 和 BC 环的顺序参数。位于结合位点远端的 AB 环表现出可变的动力学,反映了结构域不同的二聚化倾向。这些结果为理解 BRD4 的靶标识别提供了基础。