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用密度泛函理论和分子对接方法研究四氢改变茄醇分子的氟代衍生物对 COVID-19、HIV 和 HTLV 蛋白酶的抑制作用。

Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches.

机构信息

Department of Physics, Hakim Sabzevari University, Sabzevar, 96179-76487, Iran.

Department of Biology, Hakim Sabzevari University, Sabzevar, 96179-76487, Iran.

出版信息

J Mol Model. 2022 Oct 11;28(11):350. doi: 10.1007/s00894-022-05340-3.

Abstract

Structural, optoelectronic, and biological properties of tetrahydroaltersolanol (CHO) and fluorinated derivatives are calculated using density functional theory (DFT) and molecular docking approaches. It is shown that the pure CHO molecule has a direct HOMO-LUMO energy gap about 3.1 eV. The substitution of F atom at A category decreases the electronic energy gap, while it is constant at B category. In A category, the behavior of the pure molecule changed from insulator to semiconductor with various substitution of F atom. The electronic properties were depended on the F sites in the pure molecule. The molecular electrical transport properties and charge-transfer possibilities increase with decreasing energy gap. The pure CHO molecule with high energy gap has low chemical reactivity and substitution of F atom at considered molecule increases chemical reactivity. Obtained results show that F-O bonds in trifurcation bonds of CHO(F14), CHO(F16), and CHO(F17) molecules play a key role in confronting with COVID-19, HIV, and HTLV proteases, respectively. Optical spectra, such as the dielectric functions, electron energy-loss spectroscopy, refractive index, extinction coefficient, and reflection spectra show that fluorinated derivatives of CHO at B category can be used in the new drugs.

摘要

使用密度泛函理论(DFT)和分子对接方法计算了四氢阿尔特索兰醇(CHO)和氟化衍生物的结构、光电和生物性质。结果表明,纯 CHO 分子的 HOMO-LUMO 能隙约为 3.1eV。A 类中 F 原子的取代降低了电子能隙,而 B 类中则保持不变。在 A 类中,纯分子的行为从绝缘体变为半导体,F 原子的各种取代方式都有所改变。电子性质取决于纯分子中 F 原子的位置。随着能隙的减小,分子的电输运性质和电荷转移可能性增加。具有高能隙的纯 CHO 分子具有低的化学反应性,而考虑的分子中 F 原子的取代增加了化学反应性。研究结果表明,CHO(F14)、CHO(F16)和 CHO(F17)分子三分叉键上的 F-O 键在对抗 COVID-19、HIV 和 HTLV 蛋白酶方面发挥着关键作用。光学谱,如介电函数、电子能量损失谱、折射率、消光系数和反射谱表明,CHO 的氟化衍生物在 B 类中可以用于新型药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cca/9550597/d44363161f26/894_2022_5340_Fig1_HTML.jpg

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