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一种新发现的用于预测肝细胞癌患者预后的焦亡相关基因特征。

A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer.

作者信息

Shen Qinyan, Jiang Yangping, Hu Xihong, Du Zhenwu

机构信息

Department of Surgical Oncology, Affiliated Dongyang Hospital of Wenzhou Medical University, Dongyang, China.

Department of Surgical Oncology, Tianxiang East Hospital, Yiwu, China.

出版信息

Transl Cancer Res. 2022 Sep;11(9):3175-3186. doi: 10.21037/tcr-22-366.

DOI:10.21037/tcr-22-366
PMID:36237236
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9552084/
Abstract

BACKGROUND

Hepatocellular carcinoma (HCC) is a very heterogeneous illness, making prognosis prediction a huge problem. Pyroptosis, which has recently been shown to be an inflammatory type of programmed cell death, is involved in HCC. Nevertheless, the role of pyroptosis-related genes in HCC has not been fully elucidated. Thus, this study aimed to construct a prognostic signature based on pyroptosis-related genes for HCC.

METHODS

The messenger RNA expression patterns of HCC patients, as well as the accompanying clinical information, were retrieved from The Cancer Genome Atlas (TCGA) database for this research. After differentially expressed pyroptosis-related Gene in tumor and normal groups were identified, Cox regression analyses were performed to construct a prognostic signature which was then assessed through independent prognostic analysis.

RESULTS

A signature consisting of four genes (, , , and ) was constructed to predict overall survival (OS) for HCC. The signature was identified to be independent by the cox regression analysis and obtained the largest area under the receiver operating characteristic (ROC) curve (AUC) was 0.691, 0.628, and 0.632 for survival at 1, 2, and 3 years, respectively.

CONCLUSIONS

We discovered that the levels of pyroptosis-related genes expression differed across HCC patients and were associated with both survival and prognosis. This suggested that targeting pyroptosis as a treatment strategy for HCC may be a viable option.

摘要

背景

肝细胞癌(HCC)是一种高度异质性疾病,使得预后预测成为一个巨大难题。最近研究表明,细胞焦亡作为一种炎症性程序性细胞死亡,参与了HCC的发生发展。然而,细胞焦亡相关基因在HCC中的作用尚未完全阐明。因此,本研究旨在构建基于细胞焦亡相关基因的HCC预后标志物。

方法

本研究从癌症基因组图谱(TCGA)数据库中检索HCC患者的信使核糖核酸表达模式以及相关临床信息。在鉴定肿瘤组和正常组中差异表达的细胞焦亡相关基因后,进行Cox回归分析以构建预后标志物,随后通过独立预后分析对其进行评估。

结果

构建了一个由四个基因(、、、和)组成的标志物来预测HCC的总生存期(OS)。通过Cox回归分析确定该标志物具有独立性,其在1年、2年和3年生存时的受试者工作特征(ROC)曲线下面积(AUC)分别为0.691、0.628和0.632。

结论

我们发现细胞焦亡相关基因的表达水平在HCC患者中存在差异,且与生存和预后相关。这表明将细胞焦亡作为HCC的一种治疗策略可能是一个可行的选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/90255c9407b8/tcr-11-09-3175-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/b2dcb68f38d4/tcr-11-09-3175-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/54f78658bc75/tcr-11-09-3175-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/932160379b8a/tcr-11-09-3175-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/b3f5e91c9e47/tcr-11-09-3175-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/4b4b85d20acf/tcr-11-09-3175-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/90255c9407b8/tcr-11-09-3175-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/b2dcb68f38d4/tcr-11-09-3175-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/54f78658bc75/tcr-11-09-3175-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/932160379b8a/tcr-11-09-3175-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/b3f5e91c9e47/tcr-11-09-3175-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/4b4b85d20acf/tcr-11-09-3175-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5df/9552084/90255c9407b8/tcr-11-09-3175-f6.jpg

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本文引用的文献

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Cell pyroptosis in health and inflammatory diseases.健康与炎症性疾病中的细胞焦亡
Cell Death Discov. 2022 Apr 11;8(1):191. doi: 10.1038/s41420-022-00998-3.
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Simvastatin Inhibits Tumor Growth and Migration by Mediating Caspase-1-Dependent Pyroptosis in Glioblastoma Multiforme.辛伐他汀通过调控半胱氨酸天冬氨酸蛋白酶-1 依赖的焦亡抑制多形性胶质母细胞瘤的肿瘤生长和迁移。
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The Potential Roles of Exosomal Non-Coding RNAs in Hepatocellular Carcinoma.外泌体非编码RNA在肝细胞癌中的潜在作用
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HDAC11 promotes both NLRP3/caspase-1/GSDMD and caspase-3/GSDME pathways causing pyroptosis via ERG in vascular endothelial cells.组蛋白去乙酰化酶11通过内皮细胞特异性蛋白在血管内皮细胞中促进NLRP3/半胱天冬酶-1/ Gasdermin D和半胱天冬酶-3/ Gasdermin E途径引发细胞焦亡。
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Use of chemotherapy to treat hepatocellular carcinoma.使用化疗治疗肝细胞癌。
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Prognostic Implications of Pyroptosis-Related Gene Signatures in Lung Squamous Cell Carcinoma.肺鳞状细胞癌中焦亡相关基因特征的预后意义
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Combination of ruthenium (II) polypyridyl complex Δ-Ru1 and Taxol enhances the anti-cancer effect on Taxol-resistant cancer cells through Caspase-1/GSDMD-mediated pyroptosis.钌(II)多吡啶配合物Δ-Ru1与紫杉醇联合使用,通过半胱天冬酶-1/ Gasdermin D介导的细胞焦亡增强对紫杉醇耐药癌细胞的抗癌作用。
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A novel defined risk signature based on pyroptosis-related genes can predict the prognosis of prostate cancer.基于细胞焦亡相关基因的新型风险特征可预测前列腺癌的预后。
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Iridium(III) complexes entrapped in liposomes trigger mitochondria-mediated apoptosis and GSDME-mediated pyroptosis.铱(III)配合物包封在脂质体中可引发线粒体介导的细胞凋亡和 GSDME 介导的细胞焦亡。
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Apoptin induces pyroptosis of colorectal cancer cells via the GSDME-dependent pathway.凋亡素通过 GSDME 依赖性途径诱导结直肠癌细胞发生细胞焦亡。
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