Clinical Medical College, Southwest Medical University, Luzhou, China.
School of Stomatology, Southwest Medical University, Luzhou, China.
Front Immunol. 2022 Oct 3;13:1018685. doi: 10.3389/fimmu.2022.1018685. eCollection 2022.
BACKGROUND: Head and neck squamous cell carcinoma (HNSCC), the most common head and neck cancer, is highly aggressive and heterogeneous, resulting in variable prognoses and immunotherapeutic outcomes. Natural killer (NK) cells play essential roles in malignancies' development, diagnosis, and prognosis. The purpose of this study was to establish a reliable signature based on genes related to NK cells (NRGs), thus providing a new perspective for assessing immunotherapy response and prognosis of HNSCC patients. METHODS: In this study, NRGs were used to classify HNSCC from the TCGA-HNSCC and GEO cohorts. The genes were evaluated using univariate cox regression analysis based on the differential analysis of normal and tumor samples in TCGA-HNSCC conducted using the "limma" R package. Thereafter, we built prognostic gene signatures using LASSO-COX analysis. External validation was carried out in the GSE41613 cohort. Immunity analysis based on NRGs was performed several methods, such as CIBERSORT, and immunotherapy response was evaluated by TIP portal website. RESULTS: With the TCGA-HNSCC data, we established a nomogram based on the 17-NRGs signature and a variety of clinicopathological characteristics. The low-risk group exhibited a better effect when it came to immunotherapy. CONCLUSIONS: 17-NRGs signature and nomograms demonstrate excellent predictive performance and offer new perspectives for assessing pre-immune efficacy, which will facilitate future precision immuno-oncology research.
背景:头颈部鳞状细胞癌(HNSCC)是最常见的头颈部癌症,具有高度侵袭性和异质性,导致预后和免疫治疗结果各不相同。自然杀伤(NK)细胞在恶性肿瘤的发展、诊断和预后中发挥着重要作用。本研究旨在建立一个基于与 NK 细胞(NRGs)相关基因的可靠特征,从而为评估 HNSCC 患者的免疫治疗反应和预后提供新的视角。
方法:本研究使用 NRGs 对 TCGA-HNSCC 和 GEO 队列中的 HNSCC 进行分类。使用“limma”R 包对 TCGA-HNSCC 中正常和肿瘤样本进行差异分析,通过单变量 cox 回归分析评估基因。然后,我们使用 LASSO-COX 分析构建预后基因特征。在 GSE41613 队列中进行外部验证。使用 CIBERSORT 等多种方法进行基于 NRGs 的免疫分析,并通过 TIP 门户网站评估免疫治疗反应。
结果:利用 TCGA-HNSCC 数据,我们基于 17-NRGs 特征和多种临床病理特征建立了一个列线图。低危组在免疫治疗方面效果更好。
结论:17-NRGs 特征和列线图显示出优异的预测性能,为评估免疫前疗效提供了新的视角,这将有助于未来的精准免疫肿瘤学研究。
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