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蛋白质β-转角的兴衰研究展望

A Perspective on the (Rise and Fall of) Protein β-Turns.

机构信息

Université Paris Cité and Université des Antilles and Université de la Réunion, INSERM UMR_S 1134, BIGR, DSIMB Team, F-75014 Paris, France.

出版信息

Int J Mol Sci. 2022 Oct 14;23(20):12314. doi: 10.3390/ijms232012314.

Abstract

The β-turn is the third defined secondary structure after the α-helix and the β-sheet. The β-turns were described more than 50 years ago and account for more than 20% of protein residues. Nonetheless, they are often overlooked or even misunderstood. This poor knowledge of these local protein conformations is due to various factors, causes that I discuss here. For example, confusion still exists about the assignment of these local protein structures, their overlaps with other structures, the potential absence of a stabilizing hydrogen bond, the numerous types of β-turns and the software's difficulty in assigning or visualizing them. I also propose some ideas to potentially/partially remedy this and present why β-turns can still be helpful, even in the AlphaFold 2 era.

摘要

β-转角是继α-螺旋和β-折叠之后定义的第三种二级结构。β-转角早在 50 多年前就被描述过,占蛋白质残基的 20%以上。尽管如此,它们经常被忽视,甚至被误解。造成这种对这些局部蛋白质构象的认识不足的原因有很多,我在这里进行了讨论。例如,对这些局部蛋白质结构的分配、它们与其他结构的重叠、潜在缺乏稳定的氢键、β-转角的众多类型以及软件在分配或可视化它们方面的困难,仍然存在混淆。我还提出了一些可能部分解决这个问题的想法,并介绍了为什么即使在 AlphaFold 2 时代,β-转角仍然是有帮助的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2c6/9604201/a8798a299472/ijms-23-12314-g001.jpg

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