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用于低资金实验室开展经济实惠型研究的自制质粒小量提取溶液。

Homemade plasmid Miniprep solutions for affordable research in low-fund laboratories.

作者信息

Elnagar Mohamed A, Ibrahim Mohamed F, Albert Magdy, M Talal Maya, Abdelfattah Mahmoud M, El-Dabaa Ehab, Helwa Reham

机构信息

Biotechnology program, Faculty of Science, Ain Shams University, Cairo, Egypt.

Molecular Cancer Biology Group, Zoology Department, Faculty of Science, Ain Shams University, Cairo, Egypt.

出版信息

AMB Express. 2022 Nov 1;12(1):137. doi: 10.1186/s13568-022-01483-x.

Abstract

As a consequence of Covid-19 pandemic, the basic lab consumables are in shortage, especially in the low-income countries. Thus, the main objective of the present study is to develop and evaluate homemade solution to isolate plasmid. To pursue this objective, RNase A was overexpressed in Bl21 DE3 cells (E. coli strain) and prepared as crude refolding reaction with proper activity. Also, lysis buffers, neutralization buffer, and washing buffers were prepared. The homemade miniprep kit showed successful isolation of the px48SpCas9 plasmid. The prepared plasmid purity was enough to be used successfully in PCR amplification. In addition, to get extra benefits from this study, seven primers were designed to match the plasmid backbone to produce DNA ladder (100-1500 bp). In conclusion, we were able to have attainable working solutions for plasmid miniprep and DNA ladder.

摘要

由于新冠疫情,基础实验室耗材短缺,尤其是在低收入国家。因此,本研究的主要目的是开发并评估用于分离质粒的自制解决方案。为实现这一目标,核糖核酸酶A在BL21 DE3细胞(大肠杆菌菌株)中过表达,并制备成具有适当活性的粗制复性反应液。此外,还制备了裂解缓冲液、中和缓冲液和洗涤缓冲液。自制的小量制备试剂盒成功分离出了px48SpCas9质粒。所制备质粒的纯度足以成功用于PCR扩增。此外,为了从本研究中获得更多益处,设计了七条引物与质粒骨架匹配以产生DNA梯度(100 - 1500 bp)。总之,我们能够获得用于质粒小量制备和DNA梯度的可行工作解决方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83b7/9626700/1eb93776d0cf/13568_2022_1483_Fig1_HTML.jpg

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