使用高度多重化方法分析鼻腔黏液中的 CRSsNP 蛋白质组。

Analysis of CRSsNP Proteome Using a Highly Multiplexed Approach in Nasal Mucus.

机构信息

Department of Otolaryngology, Head and Neck Surgery, 9171Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.

Department of Chemistry and Pharmacy, Interdisciplinary Center for Molecular Materials, 9171Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.

出版信息

Am J Rhinol Allergy. 2023 May;37(3):348-359. doi: 10.1177/19458924221136651. Epub 2022 Nov 6.

Abstract

BACKGROUND

Chronic rhinosinusitis without nasal polyps (CRSsNP) represents a phenotype of CRS, whose immunological mechanisms are still unclear. So far there are neither suitable biomarkers to determine the course of the disease nor an individual therapy.

OBJECTIVE

The purpose of this study was to characterize the CRSsNP endotype by identifying and validating non-invasive proteomic biomarkers.

METHODS

A highly-multiplexed proteomic array consisting of antibodies against 2000 proteins was used to identify proteins that are differentially expressed in the nasal mucus of the CRSsNP and control groups (n = 7 per group). The proteins identified to be most differentially expressed were validated in matched nasal mucus samples using western blots and enzyme-linked immunosorbent assay (ELISA). Validation was also done in a second cohort using western blots (CRSsNP n = 25, control n = 23) and ELISA (n = 30 per group). Additionally, immunohistochemistry in CRSsNP and control tissue samples was performed to characterize the selected proteins further.

RESULTS

Out of the 2000 proteins examined, 7 from the most differentially expressed proteins were chosen to be validated. The validation results showed that 4 proteins were significantly upregulated in CRSsNP mucus, including macrophage inflammatory protein-1beta (MIP-1β), resistin, high mobility group box 1 (HMGB1), and forkhead box protein 3 (FOXP3). Cartilage acidic protein 1 (CRTAC1) was not significantly upregulated. Two proteins were significantly downregulated including scavenger receptor class F member 2 (SCARF2) and P-selectin. All proteins selected are mainly associated with inflammation, cell proliferation/differentiation, apoptosis and cell-cell or cell-matrix interaction.

CONCLUSION

Proteomic analysis of CRSsNP and control mucus has confirmed known and revealed novel disease-associated proteins that could potentially serve as a new biosignature for CRSsNP. Analysis of the associated pathways will specify endotypes of CRSsNP and will lead to an improved understanding of the pathophysiology of CRSsNP. Furthermore, our data contribute to the development of a reproducible, non-invasive, and quantitative "liquid biopsy" for rhinosinusitis.

摘要

背景

慢性鼻-鼻窦炎伴鼻息肉(CRSwNP)代表了一种 CRS 表型,其免疫机制尚不清楚。到目前为止,既没有合适的生物标志物来确定疾病的病程,也没有个体化的治疗方法。

目的

本研究旨在通过鉴定和验证非侵入性蛋白质组学生物标志物来描述 CRSsNP 的表型。

方法

使用一种包含针对 2000 种蛋白质的抗体的高度多重蛋白质组学阵列,来鉴定在 CRSsNP 和对照组的鼻黏液中差异表达的蛋白质(每组 7 例)。使用 Western blot 和酶联免疫吸附试验(ELISA)在匹配的鼻黏液样本中验证鉴定出的最差异表达的蛋白质。在第二个队列中,也使用 Western blot(CRSsNP n=25,对照组 n=23)和 ELISA(每组 n=30)进行验证。此外,还对 CRSsNP 和对照组组织样本进行免疫组织化学染色,以进一步对选定的蛋白质进行特征描述。

结果

在所检查的 2000 种蛋白质中,选择了 7 种最差异表达的蛋白质进行验证。验证结果表明,4 种蛋白质在 CRSsNP 黏液中显著上调,包括巨噬细胞炎性蛋白-1β(MIP-1β)、抵抗素、高迁移率族蛋白 B1(HMGB1)和叉头框蛋白 3(FOXP3)。软骨酸性蛋白 1(CRTAC1)没有显著上调。两种蛋白质显著下调,包括清道夫受体家族 F 成员 2(SCARF2)和 P-选择素。所有选定的蛋白质主要与炎症、细胞增殖/分化、凋亡以及细胞-细胞或细胞-基质相互作用相关。

结论

CRSsNP 和对照组黏液的蛋白质组学分析证实了已知的和新的与疾病相关的蛋白质,这些蛋白质可能作为 CRSsNP 的新生物标志物。对相关途径的分析将确定 CRSsNP 的表型,并深入了解 CRSsNP 的病理生理学。此外,我们的数据为开发一种可重复、非侵入性和定量的“液体活检”方法用于鼻窦炎做出了贡献。

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