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Zymo-Parts:用于在 中异源基因表达的 Golden Gate 模块化克隆工具箱。

Zymo-Parts: A Golden Gate Modular Cloning Toolbox for Heterologous Gene Expression in .

机构信息

Analysis and Redesign of Biological Networks, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstr. 1, 39106 Magdeburg, Germany.

出版信息

ACS Synth Biol. 2022 Nov 18;11(11):3855-3864. doi: 10.1021/acssynbio.2c00428. Epub 2022 Nov 8.

Abstract

is a microorganism with extremely high sugar consumption and ethanol production rates and is generally considered to hold great potential for biotechnological applications. However, its genetic engineering is still difficult, hampering the efficient construction of genetically modified strains. In this work, we present Zymo-Parts, a modular toolbox based on Golden-Gate cloning offering a collection of promoters (including native, inducible, and synthetic constitutive promoters of varying strength), an array of terminators and several synthetic ribosomal binding sites and reporter genes. All these parts can be combined in an efficient and flexible way to achieve a desired level of gene expression, either from plasmids or via genome integration. Use of the GoldenBraid-based system also enables an assembly of operons consisting of up to five genes. We present the basic structure of the Zymo-Parts cloning system, characterize several constitutive and inducible promoters, and exemplify the construction of an operon and of chromosomal integration of a reporter gene. Finally, we demonstrate the power and utility of the Zymo-Parts toolbox for metabolic engineering applications by overexpressing a heterologous gene encoding for the lactate dehydrogenase of to achieve different levels of lactate production in .

摘要

是一种具有极高糖消耗和乙醇生产速率的微生物,通常被认为在生物技术应用方面具有巨大潜力。然而,其遗传工程仍然具有挑战性,这阻碍了其遗传修饰菌株的高效构建。在这项工作中,我们提出了 Zymo-Parts,这是一个基于 Golden-Gate 克隆的模块化工具包,提供了一系列启动子(包括不同强度的天然、诱导和合成组成型启动子)、一系列终止子以及几个合成核糖体结合位点和报告基因。所有这些部件都可以以高效和灵活的方式进行组合,以实现所需的基因表达水平,无论是来自质粒还是通过基因组整合。使用基于 GoldenBraid 的系统还可以组装由多达五个基因组成的操纵子。我们介绍了 Zymo-Parts 克隆系统的基本结构,对几个组成型和诱导型启动子进行了表征,并举例说明了操纵子的构建和报告基因的染色体整合。最后,我们通过过表达编码的乳酸脱氢酶的异源基因来展示 Zymo-Parts 工具包在代谢工程应用中的强大功能和实用性,以在中实现不同水平的乳酸生产。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1504/9680023/84f9997b9e63/sb2c00428_0001.jpg

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