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植物长链非编码RNA中小开放阅读框的广泛翻译

Pervasive translation of small open reading frames in plant long non-coding RNAs.

作者信息

Sruthi K Bharathan, Menon Athira, P Akash, Vasudevan Soniya Eppurath

机构信息

Transdisciplinary Biology Lab, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, Kerala, India.

出版信息

Front Plant Sci. 2022 Oct 24;13:975938. doi: 10.3389/fpls.2022.975938. eCollection 2022.

Abstract

Long non-coding RNAs (lncRNAs) are primarily recognized as non-coding transcripts longer than 200 nucleotides with low coding potential and are present in both eukaryotes and prokaryotes. Recent findings reveal that lncRNAs can code for micropeptides in various species. Micropeptides are generated from small open reading frames (smORFs) and have been discovered frequently in short mRNAs and non-coding RNAs, such as lncRNAs, circular RNAs, and pri-miRNAs. The most accepted definition of a smORF is an ORF containing fewer than 100 codons, and ribosome profiling and mass spectrometry are the most prevalent experimental techniques used to identify them. Although the majority of micropeptides perform critical roles throughout plant developmental processes and stress conditions, only a handful of their functions have been verified to date. Even though more research is being directed toward identifying micropeptides, there is still a dearth of information regarding these peptides in plants. This review outlines the lncRNA-encoded peptides, the evolutionary roles of such peptides in plants, and the techniques used to identify them. It also describes the functions of the pri-miRNA and circRNA-encoded peptides that have been identified in plants.

摘要

长链非编码RNA(lncRNAs)主要被认为是长度超过200个核苷酸、编码潜力低的非编码转录本,存在于真核生物和原核生物中。最近的研究发现表明,lncRNAs在各种物种中都可以编码微肽。微肽由小开放阅读框(smORFs)产生,并且经常在短mRNA和非编码RNA中被发现,如lncRNAs、环状RNA和初级微小RNA(pri-miRNAs)。smORF最被广泛接受的定义是包含少于100个密码子的开放阅读框,核糖体分析和质谱分析是用于识别它们的最普遍的实验技术。尽管大多数微肽在植物发育过程和胁迫条件下发挥关键作用,但迄今为止只有少数微肽的功能得到了验证。尽管有更多的研究致力于识别微肽,但关于植物中这些肽的信息仍然匮乏。这篇综述概述了lncRNA编码的肽、此类肽在植物中的进化作用以及用于识别它们的技术。它还描述了在植物中已被识别的pri-miRNA和环状RNA编码的肽的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/337c/9638090/24005688a392/fpls-13-975938-g001.jpg

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