Workgroup Genome Mining for Secondary Metabolites, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research, Saarland University, Campus E8.1, 66123 Saarbrücken, Germany.
Helmholtz International Lab for Anti-Infectives, Helmholtz Center for Infection Research, 38124 Braunschweig, Germany.
ACS Chem Biol. 2022 Dec 16;17(12):3489-3498. doi: 10.1021/acschembio.2c00688. Epub 2022 Nov 14.
Microviridins are a class of ribosomally synthesized and post-translationally modified peptides originally discovered from cyanobacteria, featured by intramolecular ω-ester and ω-amide bonds catalyzed by two ATP-grasp ligases. In this study, 104 biosynthetic gene clusters of microviridins from Bacteroidetes were bioinformatically analyzed, which unveiled unique features of precursor peptides. The analysis of core peptides revealed a microviridin-like biosynthetic gene cluster from DSM13484 consisting of two potential precursors ChiA1 and ChiA2. Unexpectedly, the core peptide sequence of ChiA1 is consistent with the backbone of the elastase-inhibiting peptide FR901451, while ChiA2 is likely to be a precursor of an unknown product. However, an unusual C-terminal follower cleavage compared to the previously known microviridin pathways was observed and found to be dispensable for other modifications. To confirm the biosynthetic origin of FR901451, ATP-grasp ligases ChiC and ChiB were biochemically characterized to be responsible for the intramolecular ester and amide bond formation, respectively. reconstitution of the pathway showed the three-fold dehydrations of ChiA1 while unusual four-fold dehydrations were observed for ChiA2. Furthermore, gene coexpression facilitated the production of chitinoviridin A1 (FR901451) and two novel microviridin-class compounds chitinoviridin A2A and chitinoviridin A2B, with an extra macrolactone ring. All of these peptides showed potent inhibitory effects against elastase and chymotrypsin independently.
微菌肽是一类最初从蓝细菌中发现的核糖体合成和翻译后修饰的肽,其特征是由两个 ATP 抓取连接酶催化的分子内 ω-酯和 ω-酰胺键。在这项研究中,从拟杆菌门生物信息学分析了 104 个微菌肽的生物合成基因簇,揭示了前体肽的独特特征。核心肽的分析揭示了一个来自 DSM13484 的微菌肽样生物合成基因簇,由两个潜在的前体 ChiA1 和 ChiA2 组成。出乎意料的是,ChiA1 的核心肽序列与弹性蛋白酶抑制剂 FR901451 的骨架一致,而 ChiA2 可能是一种未知产物的前体。然而,与以前已知的微菌肽途径相比,观察到了一种不寻常的 C 末端尾随切割,并且发现它对于其他修饰是可有可无的。为了确认 FR901451 的生物合成起源,对 ATP 抓取连接酶 ChiC 和 ChiB 进行了生化表征,分别负责分子内酯和酰胺键的形成。该途径的重建表明 ChiA1 发生了三倍脱水,而 ChiA2 则发生了不寻常的四倍脱水。此外,基因共表达促进了几丁质菌素 A1(FR901451)和两种新型微菌肽类化合物几丁质菌素 A2A 和几丁质菌素 A2B 的产生,它们具有额外的大环内酯环。所有这些肽都独立地表现出对弹性蛋白酶和糜蛋白酶的强烈抑制作用。