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格拉肽的发现、功能与工程学

Discovery, Function, and Engineering of Graspetides.

作者信息

Choi Brian, Link A James

机构信息

Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, United States.

Department of Chemistry, Princeton University, Princeton, NJ 08544, United States.

出版信息

Trends Chem. 2023 Aug;5(8):620-633. doi: 10.1016/j.trechm.2023.04.003. Epub 2023 Apr 30.

Abstract

Graspetides are a class of RiPPs (ribosomally synthesized and post-translationally modified peptides) defined by the presence of ester or amide side chain-side chain linkages resulting in peptide macrocycles. The graspetide name comes from the ATP-grasp enzymes that install the side chain-side chain linkages. This review covers the early, activity-based isolation of the first graspetides, marinostatins and microviridins, as well as the key genomics-driven experiments that established graspetide as RiPPs. The mechanism and structure of graspetide-associated ATP-grasp enzymes is discussed. Genome mining methods to discover new graspetides as well as the analytical techniques used to determine the linkages in graspetides are described. Extant knowledge on the bioactivity of graspetides as protease inhibitors is reviewed. Further chemical modifications to graspetides as well graspetide engineering studies are also described. We conclude with several suggestions about future directions of graspetide research.

摘要

抓握肽是一类核糖体合成和翻译后修饰的肽(RiPPs),其定义为存在酯或酰胺侧链-侧链连接,从而形成肽大环。抓握肽这个名称来源于安装侧链-侧链连接的ATP抓握酶。本综述涵盖了基于活性的早期分离首批抓握肽(海制菌素和微绿菌素),以及将抓握肽确立为RiPPs的关键基因组学驱动实验。讨论了与抓握肽相关的ATP抓握酶的机制和结构。描述了发现新抓握肽的基因组挖掘方法以及用于确定抓握肽中连接的分析技术。综述了关于抓握肽作为蛋白酶抑制剂的生物活性的现有知识。还描述了对抓握肽的进一步化学修饰以及抓握肽工程研究。我们最后对抓握肽研究的未来方向提出了几点建议。

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