Department of Pathology, Fujian Medical University Union Hospital, Fuzhou, China.
Department of Breast Surgery, Fujian Medical University Union Hospital, Fuzhou, China.
Clin Rheumatol. 2023 Feb;42(2):539-548. doi: 10.1007/s10067-022-06400-y. Epub 2022 Nov 14.
This study screened out the key genes associated with the occurrence and development of lupus nephritis (LN) using bioinformatics methods, and then explored the expression of key genes in LN and the inhibitory effect of triptolide.
The GEO2R online tool in the GEO database was used to perform differential analysis of gene expression in LN tissues and normal kidney tissues. The GO function and KEGG pathway enrichment analysis of differentially expressed genes (DEGs), STRING, and Cytoscape software were used to build a protein-protein interaction network (PPI) to screen out the Hub gene. Mouse glomerular mesangial cells (MMC) were randomly divided into a control group, an interferon-γ (IFN-γ) stimulation group, and a triptolide intervention group. The relative expression of CXCL10 mRNA in each group was detected by real-time fluorescent quantitative PCR (RT-PCR). CXCL10 secretion was detected by enzyme-linked immunosorbent assay (ELISA), and Western blot was used to detect the expression of the JAK/STAT1 signaling pathway-related proteins STAT1 and p-STAT1 in each group.
Bioinformatics showed that there were 22 DEGs expression differences in the GEO database. The GO enrichment analysis showed that biological process (BP) such as the type I interferon signaling pathway, innate immune response, IFN-γ-mediated signaling pathway, virus defense response, and immune response were significantly regulated by DEGs. Through the combination of String database analysis and cytoscape software, it was found that STAT1 and CXCL10 are closely related to LN. Experimental results showed that IFN-γ induces the expression of CXCL10 mRNA and protein by activating the JAK/STAT1 signaling pathway, while triptolide inhibits the expression of CXCL10 mRNA and protein by inhibiting the JAK/STAT1 signaling pathway.
STAT1 and CXCL10 are the key genes in the occurrence and development of LN. IFN-γ induces the expression of CXCL10 by activating the JAK/STAT1 signaling pathway, while triptolide inhibits the expression of CXCL10 by blocking the JAK/STAT1 signaling pathway. Inhibition of the JAK/STAT1 signaling pathway and CXCL10 expression is expected to become a potential target for the treatment of LN. Key Points • Bioinformatics showed that there were 22 DEGs expression differences in the GEO database. • Through the combination of String database analysis and Cytoscape software, it was found that STAT1 and CXCL10 are closely related to LN. • Experimental results showed that IFN-γ induces the expression of CXCL10 mRNA and protein by activating the JAK/STAT1 signaling pathway, while triptolide inhibits the expression of CXCL10 mRNA and protein by inhibiting the JAK/STAT1 signaling pathway.
本研究通过生物信息学方法筛选与狼疮肾炎(LN)发生发展相关的关键基因,并探讨关键基因在 LN 中的表达及雷公藤内酯醇的抑制作用。
利用 GEO 数据库中的 GEO2R 在线工具对 LN 组织与正常肾组织中的基因表达进行差异分析。对差异表达基因(DEGs)进行 GO 功能和 KEGG 通路富集分析,利用 STRING 和 Cytoscape 软件构建蛋白质-蛋白质相互作用网络(PPI),筛选出 Hub 基因。将小鼠肾小球系膜细胞(MMC)随机分为对照组、干扰素-γ(IFN-γ)刺激组和雷公藤内酯醇干预组。采用实时荧光定量 PCR(RT-PCR)检测各组 CXCL10 mRNA 的相对表达水平,酶联免疫吸附试验(ELISA)检测 CXCL10 的分泌情况,Western blot 检测各组 JAK/STAT1 信号通路相关蛋白 STAT1 和 p-STAT1 的表达。
生物信息学显示,GEO 数据库中有 22 个 DEGs 表达差异。GO 富集分析显示,DEGs 显著调控的生物学过程(BP)包括Ⅰ型干扰素信号通路、固有免疫反应、IFN-γ 介导的信号通路、病毒防御反应和免疫反应等。通过 STRING 数据库分析与 Cytoscape 软件相结合,发现 STAT1 和 CXCL10 与 LN 密切相关。实验结果表明,IFN-γ 通过激活 JAK/STAT1 信号通路诱导 CXCL10 mRNA 和蛋白的表达,而雷公藤内酯醇通过抑制 JAK/STAT1 信号通路抑制 CXCL10 mRNA 和蛋白的表达。
STAT1 和 CXCL10 是 LN 发生发展的关键基因。IFN-γ 通过激活 JAK/STAT1 信号通路诱导 CXCL10 的表达,而雷公藤内酯醇通过阻断 JAK/STAT1 信号通路抑制 CXCL10 的表达。抑制 JAK/STAT1 信号通路和 CXCL10 的表达有望成为 LN 治疗的潜在靶点。
生物信息学显示,GEO 数据库中有 22 个 DEGs 表达差异。
通过 STRING 数据库分析与 Cytoscape 软件相结合,发现 STAT1 和 CXCL10 与 LN 密切相关。
实验结果表明,IFN-γ 通过激活 JAK/STAT1 信号通路诱导 CXCL10 mRNA 和蛋白的表达,而雷公藤内酯醇通过抑制 JAK/STAT1 信号通路抑制 CXCL10 mRNA 和蛋白的表达。