• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Engineering a Conformationally Switchable Artificial Metalloprotein.工程化构象可切换的人工金属蛋白。
J Am Chem Soc. 2022 Nov 30;144(47):21606-21616. doi: 10.1021/jacs.2c08885. Epub 2022 Nov 15.
2
Conformation-Dependent Hydrogen-Bonding Interactions in a Switchable Artificial Metalloprotein.构象依赖性氢键相互作用在可切换人工金属蛋白酶中。
Biochemistry. 2024 Aug 20;63(16):2040-2050. doi: 10.1021/acs.biochem.4c00209. Epub 2024 Aug 1.
3
Metalloprotein Crystallography: More than a Structure.金属蛋白晶体学:不止于结构
Acc Chem Res. 2016 Apr 19;49(4):695-702. doi: 10.1021/acs.accounts.5b00538. Epub 2016 Mar 15.
4
Unfolding and refolding of the glutamine-binding protein from Escherichia coli and its complex with glutamine induced by guanidine hydrochloride.大肠杆菌谷氨酰胺结合蛋白及其与谷氨酰胺的复合物在盐酸胍诱导下的解折叠与重折叠
Biochemistry. 2005 Apr 19;44(15):5625-33. doi: 10.1021/bi0478300.
5
The crystal structure of glutamine-binding protein from Escherichia coli.来自大肠杆菌的谷氨酰胺结合蛋白的晶体结构。
J Mol Biol. 1996 Sep 20;262(2):225-42. doi: 10.1006/jmbi.1996.0509.
6
Reversible domain closure modulates GlnBP ligand binding affinity.可还原的结构域关闭调节 GlnBP 配体结合亲和力。
PLoS One. 2022 Apr 21;17(4):e0263102. doi: 10.1371/journal.pone.0263102. eCollection 2022.
7
Metal-binding properties and structural characterization of a self-assembled coiled coil: formation of a polynuclear Cd-thiolate cluster.自组装卷曲螺旋的金属结合特性和结构表征:多核 Cd-硫醇簇的形成。
J Inorg Biochem. 2013 Feb;119:1-9. doi: 10.1016/j.jinorgbio.2012.10.010. Epub 2012 Oct 29.
8
Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.理解和调控含非天然氨基酸、非天然金属离子和非天然金属辅因子的金属酶。
Acc Chem Res. 2019 Apr 16;52(4):935-944. doi: 10.1021/acs.accounts.9b00011. Epub 2019 Mar 26.
9
A recombinant glutamine-binding protein from Escherichia coli: effect of ligand-binding on protein conformational dynamics.一种来自大肠杆菌的重组谷氨酰胺结合蛋白:配体结合对蛋白质构象动力学的影响。
Biotechnol Prog. 2004 Nov-Dec;20(6):1847-54. doi: 10.1021/bp049956u.
10
Using affinity chromatography to engineer and characterize pH-dependent protein switches.利用亲和色谱法设计和表征pH依赖性蛋白质开关。
Protein Sci. 2009 Jan;18(1):217-28. doi: 10.1002/pro.23.

引用本文的文献

1
Understanding the role of negative charge in the scaffold of an artificial enzyme for CO hydrogenation on catalysis.理解在人工酶的支架中负电荷在 CO 加氢催化作用中的作用。
J Biol Inorg Chem. 2024 Sep;29(6):625-638. doi: 10.1007/s00775-024-02070-0. Epub 2024 Aug 29.
2
Conformation-Dependent Hydrogen-Bonding Interactions in a Switchable Artificial Metalloprotein.构象依赖性氢键相互作用在可切换人工金属蛋白酶中。
Biochemistry. 2024 Aug 20;63(16):2040-2050. doi: 10.1021/acs.biochem.4c00209. Epub 2024 Aug 1.
3
Hydrogen production by a fully enzyme.通过全酶生产氢气。
Dalton Trans. 2024 Aug 6;53(31):12905-12916. doi: 10.1039/d4dt00936c.

本文引用的文献

1
Designing Artificial Metalloenzymes by Tuning of the Environment beyond the Primary Coordination Sphere.通过调变主配位层以外的环境来设计人工金属酶。
Chem Rev. 2022 Jul 27;122(14):11974-12045. doi: 10.1021/acs.chemrev.2c00106. Epub 2022 Jul 11.
2
Artificial Metalloproteins: At the Interface between Biology and Chemistry.人工金属蛋白:生物学与化学的交叉领域
JACS Au. 2022 Jun 2;2(6):1252-1265. doi: 10.1021/jacsau.2c00102. eCollection 2022 Jun 27.
3
An Interprotein Co-S Coordination Complex in the B-Trafficking Pathway.B 型跨膜运输途径中的一种蛋白质间共配位复合物
J Am Chem Soc. 2020 Sep 23;142(38):16334-16345. doi: 10.1021/jacs.0c06590. Epub 2020 Sep 14.
4
Artificial Metalloenzymes: Challenges and Opportunities.人工金属酶:挑战与机遇
ACS Cent Sci. 2019 Jul 24;5(7):1120-1136. doi: 10.1021/acscentsci.9b00397. Epub 2019 Jul 16.
5
Engineering Metalloprotein Functions in Designed and Native Scaffolds.在设计和天然支架中工程化金属蛋白酶功能。
Trends Biochem Sci. 2019 Dec;44(12):1022-1040. doi: 10.1016/j.tibs.2019.06.006. Epub 2019 Jul 13.
6
Beyond the Second Coordination Sphere: Engineering Dirhodium Artificial Metalloenzymes To Enable Protein Control of Transition Metal Catalysis.超越第二配位层:工程化双铑人工金属酶以实现过渡金属催化的蛋白质控制。
Acc Chem Res. 2019 Mar 19;52(3):576-584. doi: 10.1021/acs.accounts.8b00625. Epub 2019 Mar 4.
7
A designed heme-[4Fe-4S] metalloenzyme catalyzes sulfite reduction like the native enzyme.一种设计的血红素-[4Fe-4S]金属酶像天然酶一样催化亚硫酸盐还原。
Science. 2018 Sep 14;361(6407):1098-1101. doi: 10.1126/science.aat8474.
8
Cysteine-mediated decyanation of vitamin B12 by the predicted membrane transporter BtuM.半胱氨酸介导的预测膜转运体 BtuM 对维生素 B12 的脱氰作用。
Nat Commun. 2018 Aug 2;9(1):3038. doi: 10.1038/s41467-018-05441-9.
9
Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins.过氧化物通过人工 Cu 蛋白内氢键激活。
J Am Chem Soc. 2017 Dec 6;139(48):17289-17292. doi: 10.1021/jacs.7b10452. Epub 2017 Nov 15.
10
Optimization of Enzyme Mechanism along the Evolutionary Trajectory of a Computationally Designed (Retro-)Aldolase.沿着计算设计(反)醛缩酶的进化轨迹优化酶机制。
J Am Chem Soc. 2017 Sep 13;139(36):12541-12549. doi: 10.1021/jacs.7b05796. Epub 2017 Aug 28.

工程化构象可切换的人工金属蛋白。

Engineering a Conformationally Switchable Artificial Metalloprotein.

机构信息

Department of Chemistry, University of Illinois Urbana-Champaign, 600 S. Mathews Avenue, Urbana, Illinois61801, United States.

Department of Chemistry, University of Michigan, 930 N. University Avenue, Ann Arbor, Michigan48109, United States.

出版信息

J Am Chem Soc. 2022 Nov 30;144(47):21606-21616. doi: 10.1021/jacs.2c08885. Epub 2022 Nov 15.

DOI:10.1021/jacs.2c08885
PMID:36378237
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10290874/
Abstract

Many naturally occurring metalloenzymes are gated by rate-limiting conformational changes, and there exists a critical interplay between macroscopic structural rearrangements of the protein and subatomic changes affecting the electronic structure of embedded metallocofactors. Despite this connection, most artificial metalloproteins (ArMs) are prepared in structurally rigid protein hosts. To better model the natural mechanisms of metalloprotein reactivity, we have developed conformationally switchable ArMs (swArMs) that undergo a large-scale structural rearrangement upon allosteric effector binding. The swArMs reported here contain a Co(dmgH)(X) cofactor (dmgH = dimethylglyoxime and X = N, HC, and Pr). We used UV-vis absorbance and energy-dispersive X-ray fluorescence spectroscopies, along with protein assays, and mass spectrometry to show that these metallocofactors are installed site-specifically and stoichiometrically via direct Co-S cysteine ligation within the glutamine binding protein (GlnBP). Structural characterization by single-crystal X-ray diffraction unveils the precise positioning and microenvironment of the metallocofactor within the protein fold. Fluorescence, circular dichroism, and infrared spectroscopies, along with isothermal titration calorimetry, reveal that allosteric Gln binding drives a large-scale protein conformational change. In swArMs containing a Co(dmgH)(CH) cofactor, we show that the protein stabilizes the otherwise labile Co-S bond relative to the free complex. Kinetics studies performed as a function of temperature and pH reveal that the protein conformational change accelerates this bond dissociation in a pH-dependent fashion. We present swArMs as a robust platform for investigating the interplay between allostery and metallocofactor regulation.

摘要

许多天然存在的金属酶受到限速构象变化的控制,并且蛋白质的宏观结构重排与影响嵌入金属辅因子电子结构的亚原子变化之间存在着关键的相互作用。尽管存在这种联系,但大多数人工金属蛋白(ArM)都是在结构刚性的蛋白质宿主中制备的。为了更好地模拟金属蛋白反应的自然机制,我们开发了构象可切换的 ArM(swArM),它们在变构效应物结合时会发生大规模结构重排。这里报道的 swArM 含有 Co(dmgH)(X)辅因子(dmgH = 二甲基乙二肟,X = N、HC 和 Pr)。我们使用紫外-可见吸收光谱和能量色散 X 射线荧光光谱,以及蛋白质测定法和质谱法,表明这些金属辅因子是通过 Co-S 半胱氨酸键在谷氨酰胺结合蛋白(GlnBP)内的直接连接而特异性和化学计量地安装的。单晶 X 射线衍射的结构表征揭示了金属辅因子在蛋白质折叠内的精确定位和微环境。荧光、圆二色性和红外光谱以及等温滴定量热法表明,变构 Gln 结合驱动了大规模的蛋白质构象变化。在含有 Co(dmgH)(CH)辅因子的 swArM 中,我们表明蛋白质相对于游离复合物稳定了否则不稳定的 Co-S 键。作为温度和 pH 函数进行的动力学研究表明,蛋白质构象变化以 pH 依赖的方式加速了这种键的解离。我们提出 swArM 作为研究变构和金属辅因子调节之间相互作用的强大平台。