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本文引用的文献

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Time- and memory-efficient genome assembly with Raven.使用Raven进行高效省时的基因组组装。
Nat Comput Sci. 2021 May;1(5):332-336. doi: 10.1038/s43588-021-00073-4. Epub 2021 May 20.
2
Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae.全球分布的钙化微藻中普遍存在的核-线粒体-质体系统发育基因组不一致性。
New Phytol. 2022 Aug;235(4):1394-1408. doi: 10.1111/nph.18219. Epub 2022 Jun 15.
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Polypolish: Short-read polishing of long-read bacterial genome assemblies.多聚波兰:长读细菌基因组组装的短读抛光。
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Trycycler: consensus long-read assemblies for bacterial genomes.Trycycler:用于细菌基因组的共识长读长组装。
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The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies.基因组精修工具 POLCA 可快速准确地对基因组组装进行修正。
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Benchmarking of long-read assemblers for prokaryote whole genome sequencing.原核生物全基因组测序的长读长组装器基准测试。
F1000Res. 2019 Dec 23;8:2138. doi: 10.12688/f1000research.21782.4. eCollection 2019.
7
Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.
8
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
9
Algae-bacteria interactions that balance the planktonic microbiome.藻类-细菌相互作用平衡浮游微生物组。
New Phytol. 2019 Jul;223(1):100-106. doi: 10.1111/nph.15765. Epub 2019 Mar 26.
10
Complete Genome Sequence of sp. Strain D7, a Virulent Bacterium Isolated from an Algal Bloom in the North Atlantic.从北大西洋藻华中分离出的有毒细菌——[细菌名称]菌株D7的全基因组序列
Microbiol Resour Announc. 2018 Nov 15;7(19). doi: 10.1128/MRA.01379-18. eCollection 2018 Nov.

从钙化藻类赫氏颗石藻实验室培养物中分离出的G2菌株的全基因组序列

Complete Genome Sequence of sp. Strain G2, Isolated from a Lab Culture of the Calcifying Alga Emiliania huxleyi.

作者信息

Chang Siwat, Wang Tzu-Haw, Lai Ming-Wei, Ku Chuan

机构信息

Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.

出版信息

Microbiol Resour Announc. 2023 Jan 24;12(1):e0106722. doi: 10.1128/mra.01067-22. Epub 2022 Nov 30.

DOI:10.1128/mra.01067-22
PMID:36448822
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9872643/
Abstract

We report the complete genome sequence of sp. strain G2, which was isolated from a lab culture of the coccolithophore alga Emiliania huxleyi strain RCC 1216. The 4,963,472-bp sequence has a G+C content of 58.85% and was assembled using Illumina short reads and Oxford Nanopore Technologies long reads.

摘要

我们报告了sp. 菌株G2的完整基因组序列,该菌株是从球石藻Emiliania huxleyi菌株RCC 1216的实验室培养物中分离出来的。该序列长度为4,963,472 bp,G+C含量为58.85%,是使用Illumina短读长和Oxford Nanopore Technologies长读长进行组装的。