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药物发现中结合自由能计算的缓慢但稳步的发展。

The slow but steady rise of binding free energy calculations in drug discovery.

作者信息

Xu Huafeng

机构信息

Roivant Discovery, 151 West 42nd Street, New York, NY, 10036, USA.

出版信息

J Comput Aided Mol Des. 2023 Feb;37(2):67-74. doi: 10.1007/s10822-022-00494-x. Epub 2022 Dec 5.

Abstract

Binding free energy calculations are increasingly used in drug discovery research to predict protein-ligand binding affinities and to prioritize candidate drug molecules accordingly. It has taken decades of collective effort to transform this academic concept into a technology adopted by the pharmaceutical and biotech industry. Having personally witnessed and taken part in this transformation, here I recount the (incomplete) list of problems that had to be solved to make this computational tool practical and suggest areas of future development.

摘要

结合自由能计算在药物发现研究中越来越多地被用于预测蛋白质-配体结合亲和力,并据此对候选药物分子进行优先级排序。将这一学术概念转化为制药和生物技术行业所采用的技术,已经经过了几十年的共同努力。我个人见证并参与了这一转变,在此我列举(并不完整)一系列为使这个计算工具实用化而必须解决的问题,并提出未来的发展方向。

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