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基于ATAC-Seq分析的采后梨感染关键转录因子的筛选与调控机制

Screening and Regulation Mechanism of Key Transcription Factors of Infecting Postharvest Pears by ATAC-Seq Analysis.

作者信息

Zhao Lina, Shu Yuling, Quan Sihao, Dhanasekaran Solairaj, Zhang Xiaoyun, Zhang Hongyin

机构信息

School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China.

出版信息

Foods. 2022 Nov 29;11(23):3855. doi: 10.3390/foods11233855.

Abstract

Transcription factors play a key role in infection process. Although the crucial characteristics of some transcription factors of pathogenic fungi have been found, many transcription factors involved in infections have not been explored and studied. This study aimed to screen the transcription factors of involved in postharvest pear infections by ATAC-seq analysis and to analyze the differentially expressed peak-related genes by GO enrichment and KEGG pathway analysis. Our results found the up-regulation of differentially expressed peak-related genes involved in the MAPK signaling pathway, pentose phosphate pathway, starch and sucrose metabolism, and pentose and glucuronate interconversions. Our study especially confirmed the differential regulation of transcription factors MCM1, Ste12 and gene in the MAPK signaling pathway and , in the pentose and glucuronate interconversions pathway. These transcription factors and related genes might play an essential role in pear fruit infection by . RT-qPCR validation of twelve expressed peak-related genes in showed that the expression levels of these twelve genes were compatible with the ATAC-Seq. Our findings might shed some light on the regulatory molecular networks consisting of transcription factors that engaged in invasion and infection of pear fruits.

摘要

转录因子在感染过程中起着关键作用。尽管已经发现了一些致病真菌转录因子的关键特征,但许多参与感染的转录因子尚未得到探索和研究。本研究旨在通过ATAC-seq分析筛选参与采后梨感染的转录因子,并通过GO富集和KEGG通路分析对差异表达的峰相关基因进行分析。我们的结果发现,参与丝裂原活化蛋白激酶(MAPK)信号通路、磷酸戊糖途径、淀粉和蔗糖代谢以及戊糖与葡糖醛酸相互转化的差异表达峰相关基因上调。我们的研究特别证实了转录因子MCM1、Ste12以及MAPK信号通路中的基因和戊糖与葡糖醛酸相互转化途径中的基因的差异调控。这些转录因子和相关基因可能在[具体病原体名称未给出]对梨果实的感染中起重要作用。对[具体病原体名称未给出]中12个表达峰相关基因的RT-qPCR验证表明,这12个基因的表达水平与ATAC-Seq结果相符。我们的研究结果可能为揭示由参与[具体病原体名称未给出]对梨果实侵袭和感染的转录因子组成的调控分子网络提供一些线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ea/9738651/0a647c0f5be0/foods-11-03855-g001.jpg

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