Hu Ankang, Wang Yonghui, Tian Jiahao, Chen Zihan, Chen Renjin, Han Xufeng, Chen Yang, Liu Tingjun, Chen Quangang
Laboratory Animal Center, Xuzhou Medical University, Xuzhou, Jiangsu, China.
School of Life Science, Xuzhou Medical University, Xuzhou, Jiangsu, China.
Front Oncol. 2022 Nov 24;12:947054. doi: 10.3389/fonc.2022.947054. eCollection 2022.
DExD-box helicase 21 (DDX21) is an essential member of the RNA helicase family. DDX21 is involved in the carcinogenesis of various malignancies, but there has been no comprehensive research on its involvement in different types of cancer.
This study used TCGA, CPTAC, GTEx, GEO, FANTOM5, BioGRID, TIMER2, GEPIA2, cBioPortal, STRING, and Metascape databases and Survival ROC software to evaluate DDX21 gene expression, protein expression, immunohistochemistry, gene mutation, immune infiltration, and protein phosphorylation in 33 TCGA tumor types, as well as the prognostic relationship between DDX21 and different tumors, by survival analysis and similar gene enrichment analysis. Furthermore, Cell Counting Kit-8 (CCK-8) and Transwell studies were employed to assess the effect of DDX21 expression on lung adenocarcinoma (LUAD) cell proliferation and migration.
The DDX21 gene was highly expressed in most cancers, and overexpression was associated with poor overall survival (OS) and disease-free survival (DFS). DDX21 mutations were most common in uterine corpus endometrial carcinoma (UCEC; >5%), and DDX21 expression was positively correlated with the degree of infiltration of CAF and CD8 cells in several tumor types. Numerous genes were co-expressed with DDX21. Gene enrichment analysis revealed close links between DDX21, RNA metabolism, and ribosomal protein production. analysis of LUAD cells showed that DDX21 expression was positively correlated with cell proliferation and migration capacity, consistent with prior bioinformatics studies.
DDX21 is overexpressed in a variety of cancers, and overexpression in some cancers is associated with poor prognosis. Immune infiltration and DDX21-related gene enrichment analyses indicated that DDX21 may affect cancer development through mechanisms that regulate tumor immunity, RNA metabolism, and ribosomal protein synthesis. This pan-cancer study revealed the prognostic value and the oncogenic role of DDX21.
DEAD盒解旋酶21(DDX21)是RNA解旋酶家族的重要成员。DDX21参与多种恶性肿瘤的发生发展,但目前尚无关于其在不同类型癌症中作用的全面研究。
本研究使用TCGA、CPTAC、GTEx、GEO、FANTOM5、BioGRID、TIMER2、GEPIA2、cBioPortal、STRING和Metascape数据库以及Survival ROC软件,通过生存分析和相似基因富集分析,评估DDX21基因在33种TCGA肿瘤类型中的表达、蛋白质表达、免疫组化、基因突变、免疫浸润和蛋白质磷酸化情况,以及DDX21与不同肿瘤之间的预后关系。此外,采用细胞计数试剂盒-8(CCK-8)和Transwell实验评估DDX21表达对肺腺癌(LUAD)细胞增殖和迁移的影响。
DDX21基因在大多数癌症中高表达,其过表达与总生存期(OS)和无病生存期(DFS)较差相关。DDX21突变在子宫内膜癌(UCEC)中最为常见(>5%),并且在几种肿瘤类型中,DDX21表达与CAF和CD8细胞的浸润程度呈正相关。许多基因与DDX21共表达。基因富集分析显示DDX21、RNA代谢和核糖体蛋白产生之间存在密切联系。对LUAD细胞的分析表明,DDX21表达与细胞增殖和迁移能力呈正相关,这与先前的生物信息学研究一致。
DDX21在多种癌症中过表达,在某些癌症中过表达与预后不良相关。免疫浸润和DDX21相关基因富集分析表明,DDX21可能通过调节肿瘤免疫、RNA代谢和核糖体蛋白合成等机制影响癌症发展。这项泛癌研究揭示了DDX21的预后价值和致癌作用。