Duan Lingfeng, Wang Zhihao, Chen Hongfei, Fu Jinyang, Wei Hanzhi, Geng Zedong, Yang Wanneng
National Key Laboratory of Crop Genetic Improvement, Key Laboratory of Agricultural Equipment for the Middle and Lower Reaches of the Yangtze River, Ministry of Agriculture, and College of Engineering, Hubei Hongshan Laboratory, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
Plant Methods. 2022 Dec 15;18(1):138. doi: 10.1186/s13007-022-00970-3.
Virtual plants can simulate the plant growth and development process through computer modeling, which assists in revealing plant growth and development patterns. Virtual plant visualization technology is a core part of virtual plant research. The major limitation of the existing plant growth visualization models is that the produced virtual plants are not realistic and cannot clearly reflect plant color, morphology and texture information.
This study proposed a novel trait-to-image crop visualization tool named CropPainter, which introduces a generative adversarial network to generate virtual crop images corresponding to the given phenotypic information. CropPainter was first tested for virtual rice panicle generation as an example of virtual crop generation at the organ level. Subsequently, CropPainter was extended for visualizing crop plants (at the plant level), including rice, maize and cotton plants. The tests showed that the virtual crops produced by CropPainter are very realistic and highly consistent with the input phenotypic traits. The codes, datasets and CropPainter visualization software are available online.
In conclusion, our method provides a completely novel idea for crop visualization and may serve as a tool for virtual crops, which can assist in plant growth and development research.
虚拟植物可以通过计算机建模模拟植物的生长发育过程,有助于揭示植物的生长发育模式。虚拟植物可视化技术是虚拟植物研究的核心部分。现有植物生长可视化模型的主要局限性在于生成的虚拟植物不逼真,无法清晰反映植物的颜色、形态和纹理信息。
本研究提出了一种名为CropPainter的新型性状到图像的作物可视化工具,该工具引入了生成对抗网络来生成与给定表型信息相对应的虚拟作物图像。首先以虚拟水稻穗的生成作为器官水平虚拟作物生成的例子对CropPainter进行了测试。随后,CropPainter被扩展用于可视化作物植株(植株水平),包括水稻、玉米和棉花植株。测试表明,CropPainter生成的虚拟作物非常逼真,与输入的表型性状高度一致。代码、数据集和CropPainter可视化软件均可在线获取。
总之,我们的方法为作物可视化提供了全新的思路,可作为虚拟作物的工具,有助于植物生长发育研究。