Dubey Saurabh, Ager-Wick Eirill, Kumar Jitendra, Karunasagar Indrani, Karunasagar Iddya, Peng Bo, Evensen Øystein, Sørum Henning, Munang'andu Hetron M
Section of Experimental Biomedicine, Department of Production Animal Clinical Sciences, Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Ås, Norway.
College of Fisheries, Acharya Narendra Deva University of Agriculture and Technology, Uttar Pradesh, India.
Front Microbiol. 2022 Dec 1;13:1008870. doi: 10.3389/fmicb.2022.1008870. eCollection 2022.
species are Gram-negative bacteria that infect various living organisms and are ubiquitously found in different aquatic environments. In this study, we used whole genome sequencing (WGS) to identify and compare the antimicrobial resistance (AMR) genes, integrons, transposases and plasmids found in , and isolated from Indian major carp (, Indian carp (, catfish () and Nile tilapia () sampled in India. To gain a wider comparison, we included 11 whole genome sequences of spp. from different host species in India deposited in the National Center for Biotechnology Information (NCBI). Our findings show that all 15 sequences examined had multiple AMR genes of which the Ambler classes B, C and D β-lactamase genes were the most dominant. The high similarity of AMR genes in the sequences obtained from different host species point to interspecies transmission of AMR genes. Our findings also show that all sequences examined encoded several multidrug efflux-pump proteins. As for genes linked to mobile genetic elements (MBE), only the class I integrase was detected from two fish isolates, while all transposases detected belonged to the insertion sequence (IS) family. Only seven of the 15 sequences examined had plasmids and none of the plasmids encoded AMR genes. In summary, our findings show that spp. isolated from different host species in India carry multiple AMR genes. Thus, we advocate that the control of AMR caused by spp. in India should be based on a One Health approach.
该物种是革兰氏阴性菌,可感染多种生物,在不同的水生环境中普遍存在。在本研究中,我们使用全基因组测序(WGS)来鉴定和比较从印度采样的印度鲤( )、印度 carp( )、鲶鱼( )和尼罗罗非鱼( )中分离出的 、 和 中的抗菌药物耐药性(AMR)基因、整合子、转座酶和质粒。为了进行更广泛的比较,我们纳入了保存在美国国家生物技术信息中心(NCBI)的来自印度不同宿主物种的11个 spp. 全基因组序列。我们的研究结果表明,所有检测的15个 序列都有多个AMR基因,其中Ambler分类的B、C和D类β-内酰胺酶基因最为 dominant。从不同宿主物种获得的 序列中AMR基因的高度相似性表明AMR基因存在种间传播。我们的研究结果还表明,所有检测的 序列都编码了几种多药外排泵蛋白。至于与移动遗传元件(MBE)相关的基因,仅从两个鱼类分离株中检测到I类整合酶,而所有检测到的转座酶都属于插入序列(IS)家族。检测的15个 序列中只有7个有质粒,且没有质粒编码AMR基因。总之,我们的研究结果表明,从印度不同宿主物种分离出的 spp. 携带多个AMR基因。因此,我们主张印度应对由 spp. 引起的AMR进行控制,应基于“同一个健康”方法。