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从葡萄中分离出的非酵母CC-PT4对耐甲氧西林金黄色葡萄球菌的全基因组分析。

Whole-Genome Analysis of CC-PT4 against MRSA, a Non- Yeast Isolated from Grape.

作者信息

Shen Yong, Bai Xue, Zhou Xiran, Wang Jiaxi, Guo Na, Deng Yanhong

机构信息

College of Food Science and Engineering, Jilin University, Changchun 130062, China.

College of Veterinary Medicine, Jilin University, Changchun 130062, China.

出版信息

J Fungi (Basel). 2022 Nov 28;8(12):1255. doi: 10.3390/jof8121255.

Abstract

is often isolated from environments associated with grape and winemaking. has many beneficial properties, including the ability to improve the flavor of wine, the production of beneficial metabolites, and the ability to biocontrol. CC-PT4 (CGMCC No. 23573) was isolated from grape and can inhibit methicillin-resistant and adaptability to harsh environments. In this paper, the whole genome of CC-PT4 was sequenced and bioinformatics analyses were performed. The CC-PT4 genome was finally assembled into five scaffolds with a genome size of 9.45 Mb and a GC content of 39.5%. It was predicted that the strain contained 4150 protein-coding genes, of which two genes encoded killer toxin and one gene encoded lysostaphin. It also contains genes encoding F1F0-ATPases, Na(+)/H(+) antiporter, cation/H(+) antiporter, ATP-dependent bile acid permease, major facilitator superfamily (MFS) antiporters, and stress response protein, which help CC-PT4 adapt to bile, acid, and other stressful environments. Proteins related to flocculation and adhesion have also been identified in the CC-PT4 genome. Predicted by antiSMASH, two secondary metabolite biosynthesis gene clusters were found, and the synthesized metabolites may have antimicrobial effects. Furthermore, CC-PT4 carried genes associated with pathogenicity and drug resistance. Overall, the whole genome sequencing and analysis of CC-PT4 in this study provide valuable information for understanding the biological characteristics and further development of this strain.

摘要

通常从与葡萄和酿酒相关的环境中分离得到。具有许多有益特性,包括改善葡萄酒风味的能力、产生有益代谢产物的能力以及生物防治能力。CC-PT4(中国普通微生物菌种保藏管理中心编号:23573)从葡萄中分离得到,能够抑制耐甲氧西林菌并适应恶劣环境。本文对CC-PT4的全基因组进行了测序并进行了生物信息学分析。CC-PT4基因组最终组装成5个支架,基因组大小为9.45 Mb,GC含量为39.5%。预测该菌株含有4150个蛋白质编码基因,其中两个基因编码杀伤毒素,一个基因编码溶葡萄球菌素。它还包含编码F1F0 - ATP酶、Na(+)/H(+)反向转运蛋白、阳离子/H(+)反向转运蛋白、ATP依赖性胆汁酸通透酶、主要易化子超家族(MFS)反向转运蛋白和应激反应蛋白的基因,这些有助于CC-PT4适应胆汁、酸和其他应激环境。在CC-PT4基因组中还鉴定出了与絮凝和黏附相关的蛋白质。通过antiSMASH预测,发现了两个次生代谢物生物合成基因簇,合成的代谢物可能具有抗菌作用。此外,CC-PT4携带与致病性和耐药性相关的基因。总体而言,本研究中CC-PT4的全基因组测序和分析为了解该菌株的生物学特性和进一步开发提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/717c/9784136/43403e509abb/jof-08-01255-g001.jpg

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