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在琥珀酸脱氢酶/SDHB 亚复合物中,以反醌-富马酸盐还原酶方向进行 ROS 产生和二极管样行为的数学建模。

Mathematical Modeling of ROS Production and Diode-like Behavior in the SDHA/SDHB Subcomplex of Succinate Dehydrogenases in Reverse Quinol-Fumarate Reductase Direction.

机构信息

Institute of Theoretical and Experimental Biophysics of RAS, 142290 Pushchino, Russia.

Institute of Cell Biophysics of RAS, 142290 Pushchino, Russia.

出版信息

Int J Mol Sci. 2022 Dec 9;23(24):15596. doi: 10.3390/ijms232415596.

DOI:10.3390/ijms232415596
PMID:36555239
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9778801/
Abstract

Succinate dehydrogenase (SDH) plays an important role in reverse electron transfer during hypoxia/anoxia, in particular, in ischemia, when blood supply to an organ is disrupted, and oxygen is not available. It was detected in the voltammetry studies about three decades ago that the SDHA/SDHB subcomplex of SDH can have such a strong nonlinear property as a "tunnel-diode" behavior in reverse quinol-fumarate reductase direction. The molecular and kinetic mechanisms of this phenomenon, that is, a strong drop in the rate of fumarate reduction as the driving force is increased, are still unclear. In order to account for this property of SDH, we developed and analyzed a mechanistic computational model of reverse electron transfer in the SDHA/SDHB subcomplex of SDH. It was shown that a decrease in the rate of succinate release from the active center during fumarate reduction quantitatively explains the experimentally observed tunnel-diode behavior in SDH and threshold values of the electrode potential of about -80 mV. Computational analysis of ROS production in the SDHA/SDHB subcomplex of SDH during reverse electron transfer predicts that the rate of ROS production decreases when the tunnel-diode behavior appears. These results predict a low rate of ROS production by the SDHA/SDHB subcomplex of SDH during ischemia.

摘要

琥珀酸脱氢酶 (SDH) 在缺氧/无氧期间的逆向电子转移中发挥重要作用,特别是在缺血期间,当器官的血液供应中断且无法获得氧气时。大约三十年前的伏安法研究中检测到,SDH 的 SDHA/SDHB 亚基在逆向醌-富马酸还原酶方向上具有如此强烈的非线性特性,即“隧道二极管”行为。这种现象的分子和动力学机制,即随着驱动力的增加,富马酸还原率的强烈下降,仍然不清楚。为了解释 SDH 的这种特性,我们开发并分析了 SDH 的 SDHA/SDHB 亚基中逆向电子转移的机制计算模型。结果表明,富马酸还原过程中从活性中心释放琥珀酸的速率降低,定量解释了 SDH 中实验观察到的隧道二极管行为和电极电势的阈值约为-80 mV。在逆向电子转移过程中对 SDH 的 SDHA/SDHB 亚基中 ROS 生成的计算分析预测,当出现隧道二极管行为时,ROS 生成的速率会降低。这些结果预测了在缺血期间 SDH 的 SDHA/SDHB 亚基产生 ROS 的速率较低。

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