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一种乙基叔丁基醚降解细菌群落的比较蛋白质组学分析

Comparative Proteomic Analysis of an Ethyl Tert-Butyl Ether-Degrading Bacterial Consortium.

作者信息

Gunasekaran Vijayalakshmi, Canela Núria, Constantí Magda

机构信息

Departament d'Enginyeria Química, Universitat Rovira i Virgili, Av. Països Catalans, 26, 43007 Tarragona, Spain.

FA Bio, Harpenden AL5 2JQ, UK.

出版信息

Microorganisms. 2022 Nov 25;10(12):2331. doi: 10.3390/microorganisms10122331.

Abstract

A bacterial consortium capable of degrading ethyl -butyl ether (ETBE) as a sole carbon source was enriched and isolated from gasoline-contaminated water. sp., sp., sp., sp., and sp. were identified as the initial populations with the 16S rDNA analysis. The consortium aerobically degraded 49% of 50 mg/L of ETBE, in 6 days. The ETBE degrading efficiency of the consortium increased to 98% even with the higher concentrations of ETBE (1000 mg/L) in the subsequent subcultures, which accumulated tert-butyl alcohol (TBA). sp. and sp. were identified as the predominant ETBE degrading populations in the final subculture. The metaproteome of the ETBE-grown bacterial consortium was compared with the glucose-grown bacterial consortium, using 2D-DIGE. Proteins related to the ETBE metabolism, stress response, carbon metabolism and chaperones were found to be abundant in the presence of ETBE while proteins related to cell division were less abundant. The metaproteomic study revealed that the ETBE does have an effect on the metabolism of the bacterial consortium. It also enabled us to understand the responses of the complex bacterial consortium to ETBE, thus revealing interesting facts about the ETBE degrading bacterial community.

摘要

从受汽油污染的水中富集并分离出一个能够以乙基叔丁基醚(ETBE)作为唯一碳源进行降解的细菌群落。通过16S rDNA分析,鉴定出sp.、sp.、sp.、sp.和sp.为初始菌群。该细菌群落在6天内好氧降解了50 mg/L的ETBE中的49%。在随后的传代培养中,即使ETBE浓度更高(1000 mg/L),该细菌群落的ETBE降解效率也提高到了98%,并积累了叔丁醇(TBA)。在最终传代培养中,鉴定出sp.和sp.为主要的ETBE降解菌群。使用二维差异凝胶电泳(2D-DIGE),将以ETBE为生长底物的细菌群落的元蛋白质组与以葡萄糖为生长底物的细菌群落进行了比较。发现在有ETBE存在的情况下,与ETBE代谢、应激反应、碳代谢和伴侣蛋白相关的蛋白质含量丰富,而与细胞分裂相关的蛋白质含量较少。元蛋白质组学研究表明,ETBE确实对细菌群落的代谢有影响。它还使我们能够了解复杂细菌群落对ETBE的反应,从而揭示有关ETBE降解细菌群落的有趣事实。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ccc9/9781318/826dcabf457f/microorganisms-10-02331-g002.jpg

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