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Identification of Oxidative Stress-Related Biomarkers in Diabetic Kidney Disease.

作者信息

Ma Xiaoju, Zhang Xiaobo, Leng Tian, Ma Jingru, Yuan Zhongzhu, Gu Yalin, Hu Tingting, Liu Qiuyan, Shen Tao

机构信息

School of Basic Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.

School of Public Health, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China.

出版信息

Evid Based Complement Alternat Med. 2022 Dec 31;2022:1067504. doi: 10.1155/2022/1067504. eCollection 2022.


DOI:10.1155/2022/1067504
PMID:36624863
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9825216/
Abstract

BACKGROUND: Diabetic kidney disease (DKD) is a leading cause of end-stage renal disease throughout the world. In kidney disease, oxidative stress has been linked to both antioxidant depletions and increased reactive oxygen species (ROS) production. Thus, the objective of this study was to identify biomarkers related to oxidative stress in DKD. METHODS: The gene expression profile of the DKD was extracted from the Gene Expression Omnibus (GEO) database. The identification of the differentially expressed genes (DEGs) was performed using the "limma" package, and weighted gene coexpression network analysis (WGCNA) was used to find the gene modules that were most related to DKD. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis was performed using "Org.Hs.eg.db" package. The protein-protein interaction (PPI) network was constructed using the STRING database. The hub genes were identified by the Molecular Complex Detection (MCODE) plug-in of Cytoscape software. The diagnostic capacity of hub genes was verified using the receiver operating characteristic (ROC) curve. Correlations between diagnostic genes were analyzed using the "corrplot" package. In addition, the miRNA gene transcription factor (TF) network was used to explain the regulatory mechanism of hub genes in DKD. RESULTS: DEGs analysis and WGCNA-identified 160 key genes were identified in DKD patients. Among them, nine oxidative stress-related genes were identified as candidate hub genes for DKD. Using the PPI network, five hub genes, NR4A2, DUSP1, FOS, JUN, and PTGS2, were subsequently identified. All the hub genes were downregulated in DKD and had a high diagnostic value of DKD. The regulatory mechanism of hub genes was analyzed from the miRNA gene-TF network. CONCLUSION: Our study identified NR4A2, DUSP1, FOS, JUN, and PTGS2 as hub genes of DKD. These genes may serve as potential therapeutic targets for DKD patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/158fab641e31/ECAM2022-1067504.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/8406800da5ce/ECAM2022-1067504.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/7ddd542947d4/ECAM2022-1067504.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/ab4f225d54b7/ECAM2022-1067504.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/0dc8e48474b0/ECAM2022-1067504.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/85fd80d1ef1a/ECAM2022-1067504.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/464cfde0fc88/ECAM2022-1067504.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/158fab641e31/ECAM2022-1067504.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/8406800da5ce/ECAM2022-1067504.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/7ddd542947d4/ECAM2022-1067504.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/ab4f225d54b7/ECAM2022-1067504.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/0dc8e48474b0/ECAM2022-1067504.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/85fd80d1ef1a/ECAM2022-1067504.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/464cfde0fc88/ECAM2022-1067504.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd1/9825216/158fab641e31/ECAM2022-1067504.007.jpg

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引用本文的文献

[1]
Single-Cell Spatial MIST for Versatile, Scalable Detection of Protein Markers.

Biosensors (Basel). 2023-8-27

本文引用的文献

[1]
Oxidative Stress and NRF2/KEAP1/ARE Pathway in Diabetic Kidney Disease (DKD): New Perspectives.

Biomolecules. 2022-9-2

[2]
Up-Date on Diabetic Nephropathy.

Life (Basel). 2022-8-8

[3]
Intestinal Bacterial Translocation Contributes to Diabetic Kidney Disease.

J Am Soc Nephrol. 2022-6

[4]
The Chinese medicine Fufang Zhenzhu Tiaozhi capsule protects against renal injury and inflammation in mice with diabetic kidney disease.

J Ethnopharmacol. 2022-6-28

[5]
Protective effect of vanillic acid against diabetes and diabetic nephropathy by attenuating oxidative stress and upregulation of NF-κB, TNF-α and COX-2 proteins in rats.

Phytother Res. 2022-3

[6]
Inflammation and Oxidative Stress in Diabetic Kidney Disease: The Targets for SGLT2 Inhibitors and GLP-1 Receptor Agonists.

Int J Mol Sci. 2021-10-6

[7]
ATP-triggered mitochondrial cascade reactions for cancer therapy with nanoscale zeolitic imidazole framework-90.

Theranostics. 2021

[8]
Chronic Inflammation in Chronic Kidney Disease Progression: Role of Nrf2.

Kidney Int Rep. 2021-5-4

[9]
Fibroblast Growth Factor Type 1 Ameliorates High-Glucose-Induced Oxidative Stress and Neuroinflammation in Retinal Pigment Epithelial Cells and a Streptozotocin-Induced Diabetic Rat Model.

Int J Mol Sci. 2021-7-5

[10]
Transcriptional Profiling of Monocytes Deficient in Nuclear Orphan Receptors and Reveals Distinct Signalling Roles Related to Antigen Presentation and Viral Response.

Front Immunol. 2021

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