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基于分子动力学模拟预测 - 衍生植物化学物质的可能抗糖尿病和抗炎靶点及机制见解。

prediction of the possible antidiabetic and anti-inflammatory targets of -derived phytochemicals and mechanistic insights by molecular dynamics simulations.

机构信息

Department of Biosciences and Biotechnology, University of Medical Sciences, Ondo City, Nigeria.

Department of Biochemistry, University of Medical Sciences, Ondo City, Nigeria.

出版信息

J Biomol Struct Dyn. 2023;41(21):12225-12241. doi: 10.1080/07391102.2023.2166591. Epub 2023 Jan 16.

DOI:10.1080/07391102.2023.2166591
PMID:36645154
Abstract

is used traditionally for the treatment of diabetes and its complications. However, the mode of action and the likely bioactive phytochemicals involved are not yet fully explored. GC-MS analysis was employed to identify the inherent compounds in leaves. To gain an insight into the antidiabetic mode of action of this plant, the identified phytochemicals were subjected to computational studies against four molecular targets of diabetes, dipeptidyl peptidase-4, glycogen synthase kinase 3, NADPH oxidase (NOX), sodium-glucose co-transporter-2, and one target of inflammation, cyclooxygenase-2. Compounds with notable binding affinity were subjected to druggability test. Results from molecular docking showed that seven of the compounds investigated exhibited druggability properties and had outstanding binding affinity values for these targets relative to values obtained for the respective standards of each of the targets. Analysis of the MD trajectories from a 100 ns atomistic run shows that the integrities of the complex systems were more stable and preserved throughout the simulation than the unbound protein. These results indicated that the antidiabetic and anti-inflammatory effects of these compounds might be via the inhibition of these targets, laying the foundation for further studies, such as and studies to fully validate the anti-diabetic agents from this plant.Communicated by Ramaswamy H. Sarma.

摘要

被传统用于治疗糖尿病及其并发症。然而,其作用模式和可能涉及的生物活性植物化学成分尚未得到充分探索。采用 GC-MS 分析鉴定了 叶子中的固有化合物。为了深入了解这种植物的抗糖尿病作用模式,对鉴定出的植物化学成分进行了针对糖尿病的四个分子靶点(二肽基肽酶-4、糖原合酶激酶 3、NADPH 氧化酶 (NOX)、钠-葡萄糖共转运蛋白-2)和一个炎症靶点(环氧化酶-2)的计算研究。对具有显著结合亲和力的化合物进行了药物可开发性测试。分子对接结果表明,在所研究的七种化合物中,有七种化合物具有药物开发特性,并且相对于各个靶点的相应标准值,它们对这些靶点具有出色的结合亲和力值。对 100ns 原子模拟运行的 MD 轨迹进行分析表明,与未结合的蛋白质相比,整个模拟过程中复杂系统的完整性更加稳定和得到了保持。这些结果表明,这些化合物的抗糖尿病和抗炎作用可能是通过抑制这些靶点实现的,为进一步的研究奠定了基础,例如 和 研究,以充分验证这种植物的抗糖尿病药物。由 Ramaswamy H. Sarma 交流。

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