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捕食性步甲(Podabrus annulatus,鞘翅目,花萤科)不同组织转录组中嗅觉相关基因的鉴定与表达分析

Identification and expression analyses of the olfactory-related genes in different tissues' transcriptome of a predacious soldier beetle, Podabrus annulatus (Coleoptera, Cantharidae).

作者信息

Wang Xiaoxiao, Liu Haoyu, Xie Guanglin, Wang Wenkai, Yang Yuxia

机构信息

The Key Laboratory of Zoological Systematics and Application, School of Life Science, Institute of Life Science and Green Development, Hebei University, Baoding, China.

College of Agriculture, Yangtze University, Jingzhou, China.

出版信息

Arch Insect Biochem Physiol. 2023 Apr;112(4):e21997. doi: 10.1002/arch.21997. Epub 2023 Jan 19.

Abstract

We sequenced and analyzed the transcriptomes from different tissues of the soldier beetle, Podabrus annulatus (Coleoptera: Cantharidae), and obtained 75.74 Gb clean reads which were assembled into 95,274 unigenes. Among these transcripts, 25,484 unigenes of highly quality were annotated. Based on annotation and tBLASTn results, we identified a total of 101 candidate olfactory-related genes for the first time, including 11 putative odorant-binding proteins (OBPs), 6 chemosensory proteins (CSP), 50 olfactory receptors (ORs), 25 gustatory receptors (GRs), 6 ionotropic receptors (IRs), and 3 sensory neuron membrane proteins (SNMPs). BLASTX best-hit results indicated that these chemosensory genes were most identical to their respective orthologs from Photinus pyralis. Phylogenetic analyses also revealed that the ORs, GRs, and IRs of Podabrus annulatus are closely related to those of Photinus pyralis. The fragment per kilobase per million mapped fragments (FPKM) values showed that the PannOBP2, PannOBP3, and PannOBP10 were predominantly expressed in the antennae, PannOBP1 in the abdomen-thorax, while others were not identified to be tissue-specific. These olfactory-related differentially expressed genes (DEGs) demonstrated different roles in the olfactory system of Podabrus annulatus. This study establishes the groundwork for future research into the molecular mechanism of olfactory recognition in Podabrus annulatus.

摘要

我们对环斑细胫步甲(鞘翅目:花萤科)不同组织的转录组进行了测序和分析,获得了75.74 Gb的clean reads,并将其组装成95,274个单基因簇。在这些转录本中,有25,484个高质量的单基因簇得到了注释。基于注释和tBLASTn结果,我们首次共鉴定出101个候选嗅觉相关基因,包括11个假定的气味结合蛋白(OBP)、6个化学感受蛋白(CSP)、50个嗅觉受体(OR)、25个味觉受体(GR)、6个离子型受体(IR)和3个感觉神经元膜蛋白(SNMP)。BLASTX最佳匹配结果表明,这些化学感受基因与其在萤火虫中的各自直系同源基因最为相似。系统发育分析还表明,环斑细胫步甲的OR、GR和IR与萤火虫的密切相关。每百万映射片段中每千碱基的片段数(FPKM)值显示,PannOBP2、PannOBP3和PannOBP10主要在触角中表达,PannOBP1在胸腹部位表达,而其他基因未被鉴定为具有组织特异性。这些嗅觉相关的差异表达基因(DEG)在环斑细胫步甲的嗅觉系统中发挥着不同的作用。本研究为今后深入研究环斑细胫步甲嗅觉识别的分子机制奠定了基础。

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