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在类似Alu重复序列和富含A+T的回文DNA镶嵌区域中,新型扩增接头的一个热点。

A hotspot for novel amplification joints in a mosaic of Alu-like repeats and palindromic A + T-rich DNA.

作者信息

Hyrien O, Debatisse M, Buttin G, de Saint Vincent B R

机构信息

Unité de Génétique Somatique (UA CNRS 361), Institut Pasteur, Paris, France.

出版信息

EMBO J. 1987 Aug;6(8):2401-8. doi: 10.1002/j.1460-2075.1987.tb02518.x.

DOI:10.1002/j.1460-2075.1987.tb02518.x
PMID:3665882
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC553646/
Abstract

We have identified, in the amplified domain of adenylate deaminase (AMPD) overproducing Chinese hamster fibroblasts, a 2.6 kb recombinogenic DNA region which is frequently involved in amplification-associated rearrangements. The nucleotide sequence reveals a mosaic organization of four Alu-equivalent repeats of the B1 and B2 families and eight long A + T-rich DNA segments. Part of this region is enriched with long imperfect palindromes. The center of one palindrome contains a putative topoisomerase I cleavage site and this site defines the position of a novel junction which was formed by illegitimate recombination with anther A + T-rich DNA sequence located far apart on the amplified DNA. These findings and their significance are discussed in the context of related data from other systems and in the light of current models for eukaryotic DNA recombination, replication and organization.

摘要

我们在过量产生腺苷酸脱氨酶(AMPD)的中国仓鼠成纤维细胞的扩增区域中,鉴定出一个2.6 kb的重组DNA区域,该区域经常参与与扩增相关的重排。核苷酸序列显示出B1和B2家族的四个Alu等效重复序列和八个长的富含A+T的DNA片段的镶嵌组织。该区域的一部分富含长的不完全回文序列。一个回文序列的中心包含一个推定的拓扑异构酶I切割位点,该位点定义了一个新连接点的位置,该连接点是通过与扩增DNA上相距很远的另一个富含A+T的DNA序列进行非法重组而形成的。这些发现及其意义将结合来自其他系统的相关数据,并根据当前关于真核DNA重组、复制和组织的模型进行讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d85f/553646/87e20dd59732/emboj00248-0221-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d85f/553646/560778afbe99/emboj00248-0221-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d85f/553646/87e20dd59732/emboj00248-0221-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d85f/553646/560778afbe99/emboj00248-0221-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d85f/553646/87e20dd59732/emboj00248-0221-b.jpg

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A hotspot for novel amplification joints in a mosaic of Alu-like repeats and palindromic A + T-rich DNA.在类似Alu重复序列和富含A+T的回文DNA镶嵌区域中,新型扩增接头的一个热点。
EMBO J. 1987 Aug;6(8):2401-8. doi: 10.1002/j.1460-2075.1987.tb02518.x.
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Co-amplified markers alternate in megabase long chromosomal inverted repeats and cluster independently in interphase nuclei at early steps of mammalian gene amplification.共扩增标记在长达兆碱基的染色体反向重复序列中交替出现,并在哺乳动物基因扩增的早期阶段在间期核中独立聚集。
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本文引用的文献

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The Chinese hamster Alu-equivalent sequence: a conserved highly repetitious, interspersed deoxyribonucleic acid sequence in mammals has a structure suggestive of a transposable element.中国仓鼠Alu等效序列:一种在哺乳动物中保守的高度重复、散布的脱氧核糖核酸序列,其结构提示为一种可转座元件。
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Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response.两个大型拟南芥基因家族与芸苔属基因超家族同源,该超家族编码花粉壁蛋白和自交不亲和反应的雄性成分。
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Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.核小体不会在双链RNA上形成,也不会在重组DNA中的聚(dA)·聚(dT)区段上形成。
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Stepwise isolation and properties of unstable Chinese hamster cell variants that overproduce adenylate deaminase.过量产生腺苷酸脱氨酶的不稳定中国仓鼠细胞变体的逐步分离及特性
Mol Cell Biol. 1982 Nov;2(11):1346-53. doi: 10.1128/mcb.2.11.1346-1353.1982.
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Systematic punctuation of eukaryotic DNA by A+T-rich sequences.富含A+T序列对真核生物DNA的系统性标点作用。
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Low molecular weight RNAs transcribed in vitro by RNA polymerase III from Alu-type dispersed repeats in Chinese hamster DNA are also found in vivo.由RNA聚合酶III体外转录中国仓鼠DNA中Alu型分散重复序列产生的低分子量RNA在体内也能找到。
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