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与乌拉圭美利奴绵羊羊毛、生长和繁殖性状相关的基因组区域。

Genomic Regions Associated with Wool, Growth and Reproduction Traits in Uruguayan Merino Sheep.

机构信息

School of Agriculture and Environment, Massey University, Palmerston North 4410, New Zealand.

National Research Program on Meat and Wool Production, Instituto Nacional de Investigación Agropecuaria, INIA Las Brujas, Ruta 48 Km 10, Canelones 90100, Uruguay.

出版信息

Genes (Basel). 2023 Jan 7;14(1):167. doi: 10.3390/genes14010167.

Abstract

The aim of this study was to identify genomic regions and genes associated with the fiber diameter (FD), clean fleece weight (CFW), live weight (LW), body condition score (BCS), pregnancy rate (PR) and lambing potential (LP) of Uruguayan Merino sheep. Phenotypic records of approximately 2000 mixed-age ewes were obtained from a Merino nucleus flock. Genome-wide association studies were performed utilizing single-step Bayesian analysis. For wool traits, a total of 35 genomic windows surpassed the significance threshold (PVE ≥ 0.25%). The proportion of the total additive genetic variance explained by those windows was 4.85 and 9.06% for FD and CFW, respectively. There were 42 windows significantly associated with LWM, which collectively explained 43.2% of the additive genetic variance. For BCS, 22 relevant windows accounted for more than 40% of the additive genetic variance, whereas for the reproduction traits, 53 genomic windows (24 and 29 for PR and LP, respectively) reached the suggestive threshold of 0.25% of the PVE. Within the top 10 windows for each trait, we identified several genes showing potential associations with the wool (e.g., IGF-1, TGFB2R, PRKCA), live weight (e.g., CAST, LAP3, MED28, HERC6), body condition score (e.g., CDH10, TMC2, SIRPA, CPXM1) or reproduction traits (e.g., ADCY1, LEPR, GHR, LPAR2) of the mixed-age ewes.

摘要

本研究旨在鉴定与纤维直径(FD)、净毛重(CFW)、活重(LW)、体况评分(BCS)、妊娠率(PR)和产羔率(LP)相关的基因组区域和基因,这些指标均与乌拉圭 Merino 绵羊有关。本研究从 Merino 核心群中获得了约 2000 只不同年龄段母羊的表型记录。利用单步贝叶斯分析进行全基因组关联研究。对于羊毛性状,共有 35 个基因组窗口超过了显著阈值(PVE≥0.25%)。这些窗口共解释了 FD 和 CFW 总加性遗传方差的 4.85%和 9.06%。有 42 个与 LWM 显著相关的窗口,共解释了 43.2%的加性遗传方差。对于 BCS,有 22 个相关窗口解释了超过 40%的加性遗传方差,而对于繁殖性状,有 53 个基因组窗口(PR 和 LP 分别为 24 个和 29 个)达到了 0.25%PVE 的提示性阈值。在每个性状的前 10 个窗口中,我们鉴定了一些基因,它们与羊毛(如 IGF-1、TGFB2R、PRKCA)、活重(如 CAST、LAP3、MED28、HERC6)、体况评分(如 CDH10、TMC2、SIRPA、CPXM1)或繁殖性状(如 ADCY1、LEPR、GHR、LPAR2)存在潜在关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a377/9858812/8cbba68d769b/genes-14-00167-g001.jpg

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