Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD 20993, USA.
Viruses. 2022 Dec 21;15(1):17. doi: 10.3390/v15010017.
There is widespread interest in using obligately lytic bacteriophages ("phages") to treat human bacterial infections. Among infections, the USA300 lineage is a frequent cause of invasive disease. We observed that phage K, a model myophage, exhibits temperature-sensitive growth on USA300 strains, with the wild-type phage providing poorer growth suppression in broth and forming smaller and fainter plaques at 37 °C vs. 30 °C. We isolated 65 mutants of phage K that had improved plaquing characteristics at 37 °C when compared to the parental phage. In all 65 mutants, this phenotype was attributable to loss-of-function (LoF) mutations in , which encodes a protein of unknown function that has homologs only among the (SPO1-like myophages infecting gram-positive bacteria). Additional experiments with representative mutants consistently showed that the temperature-sensitive plaque phenotype was specific to USA300 MRSA strains and that Gp102 disruption was correlated with improved suppression of bacterial growth in broth and improved antibacterial activity in a mouse model of upper respiratory tract infection. The same genotype and in vitro phenotypes could be replicated in close relatives of phage K. Gp102 disruption did not have a detectable effect on adsorption but did delay cell culture lysis relative to wild-type under permissive infection conditions, suggesting that conservation might be maintained by selective pressure for more rapid replication. Expression of on a plasmid was toxic to both an MSSA and a USA300 MRSA strain. Molecular modeling predicts a protein with two helix-turn-helix domains that displays some similarity to DNA-binding proteins such as transcription factors. While its function remains unclear, is a conserved gene that is important to the infection process of phages, and it appears that the manner in which USA300 strains defend against them at 37 °C can be overcome by LoF mutations.
人们普遍有兴趣使用专性裂解噬菌体(“噬菌体”)来治疗人类细菌感染。在这些感染中,USA300 谱系是侵袭性疾病的常见原因。我们观察到噬菌体 K,一种模型噬菌体能在 USA300 菌株上表现出温度敏感的生长,野生型噬菌体在肉汤中提供的生长抑制效果较差,并且在 37°C 时形成的菌斑更小、更暗。我们分离出 65 种噬菌体 K 的突变体,与亲本噬菌体相比,这些突变体在 37°C 时具有更好的菌斑特征。在所有 65 种突变体中,这种表型归因于编码未知功能蛋白的基因的功能丧失(LoF)突变,该基因仅在属于(感染革兰氏阳性细菌的 SPO1 样噬菌体)的同源物中存在。与代表性突变体的额外实验一致表明,温度敏感的菌斑表型是特定于 USA300 MRSA 菌株的,并且 Gp102 缺失与在肉汤中抑制细菌生长的能力提高以及在上呼吸道感染的小鼠模型中提高抗菌活性相关。在噬菌体 K 的近亲中可以复制相同的基因型和体外表型。Gp102 缺失对吸附没有明显影响,但相对于野生型在允许感染条件下延迟细胞培养裂解,这表明 的保守性可能是通过对更快复制的选择压力来维持的。质粒上的表达对 MSSA 和 USA300 MRSA 菌株都有毒性。分子建模预测出一种具有两个螺旋-转角-螺旋结构域的蛋白质,它与转录因子等 DNA 结合蛋白显示出一些相似性。虽然其功能尚不清楚,但 是噬菌体感染过程中重要的保守基因,似乎 USA300 菌株在 37°C 下抵御它们的方式可以被 LoF 突变克服。