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胰腺腺癌患者铁代谢相关基因预后预测模型的开发与验证

Development and validation of a prognostic prediction model for iron metabolism-related genes in patients with pancreatic adenocarcinoma.

作者信息

Wei Wenhan, Cao Bin, Xu Dongchao, Liu Yusheng, Zhang Xiaofeng, Wang Yu

机构信息

Department of Gastroenterology, Affiliated Hangzhou First People's Hospital, Zhejiang University School of Medicine, Hangzhou, China.

China State Key Laboratory of CAD&CG, Zhejiang University, Hangzhou, China.

出版信息

Front Genet. 2023 Jan 4;13:1058062. doi: 10.3389/fgene.2022.1058062. eCollection 2022.

Abstract

Pancreatic adenocarcinoma (PAAD) is one of the most aggressive tumors of the digestive tract, with low surgical resection rate and insensitivity to radiotherapy and chemotherapy. Existing evidence suggests that regulation of ferroptosis can induce PAAD cell death, inhibit tumor growth, and may synergistically improve the sensitivity of other antitumor drugs. However, there is little of systematic research on iron metabolism-related genes in PAAD. In this study, a risk-score system of PAAD iron metabolism-related genes was designed and tested, and verified to be robust. The TCGA database was used to download 177 PAAD patients' message RNA (mRNA) expression profiles and clinical characteristics. By identifying dysregulated iron metabolism-related genes between PAAD related tissues and adjacent normal tissues, univariate Cox proportional hazards regression and LASSO regression algorithm were used to establish prognostic risk-score system and construct nomogram to estimate the 1-, 2-, 3-year survival in PAAD patients. Finally, selected genes were validated by quantitative PCR (q-PCR). A 9-gene related to iron metabolism risk-score system of PAAD was constructed and validated. The clinicopathological characteristics of age, histologic grade, pathologic stage, T stage, residual tumor, and primary therapy outcome were all worse in patients with a higher risk-score. Further, immunohistochemistry results of , , , , , and confirmed that patients with higher expression are more malignant. Then, a nomogram with 9-gene risk score system as a separate clinical factor was utilized to foretell the 1-, 2-, 3-year overall survival rate of PAAD patients. Results of q-PCR showed that 8 of the 9 genes screened were significantly up-regulated in at least one PAAD cell line, and one gene was significantly down-regulated in three PAAD cell lines. To conclude, we generated a nine-gene system linked to iron metabolism as an independent indicator for predicting PAAD prognosis, therefore presenting a possible prognostic biomarker and potential treatment targets for PAAD.

摘要

胰腺腺癌(PAAD)是消化道最具侵袭性的肿瘤之一,手术切除率低,对放疗和化疗不敏感。现有证据表明,调节铁死亡可诱导PAAD细胞死亡,抑制肿瘤生长,并可能协同提高其他抗肿瘤药物的敏感性。然而,关于PAAD中铁代谢相关基因的系统研究较少。在本研究中,设计并测试了PAAD铁代谢相关基因的风险评分系统,并验证其具有稳健性。利用TCGA数据库下载了177例PAAD患者的信使RNA(mRNA)表达谱和临床特征。通过识别PAAD相关组织与相邻正常组织之间失调的铁代谢相关基因,采用单因素Cox比例风险回归和LASSO回归算法建立预后风险评分系统并构建列线图,以估计PAAD患者1年、2年、3年生存率。最后,通过定量PCR(q-PCR)对所选基因进行验证。构建并验证了一个与PAAD铁代谢风险评分系统相关的9基因模型。风险评分较高的患者在年龄、组织学分级、病理分期、T分期、残余肿瘤和初始治疗结果等临床病理特征方面均较差。此外,[具体蛋白名称1]、[具体蛋白名称2]、[具体蛋白名称3]、[具体蛋白名称4]、[具体蛋白名称5]和[具体蛋白名称6]的免疫组化结果证实,表达较高的患者恶性程度更高。然后,将具有9基因风险评分系统作为独立临床因素的列线图用于预测PAAD患者1年、2年、3年总生存率。q-PCR结果显示,筛选出的9个基因中有8个在至少一种PAAD细胞系中显著上调,1个基因在三种PAAD细胞系中显著下调。总之,我们生成了一个与铁代谢相关的9基因系统作为预测PAAD预后的独立指标,从而为PAAD提供了一种可能的预后生物标志物和潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c93/9846079/17ed753e3379/fgene-13-1058062-g001.jpg

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